RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA827593" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA827593 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3372386 3372386 PRJNA827593_P_NODE_57683_length_260_cov_1.631016_g57384_i0 PRJNA827593 57683 260 1.631016 4.2406416 Soboliphyme baturini 241478 Nematoda Nematoda 82.4 6.21e-17   NR VDP46461.1 241478 g57384 i0 53 0.761538461538461 66 31 76.2 0 7 204 43 108 VDP46461.1 unnamed protein product [Soboliphyme baturini] diamond 198 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
26778416 26778416 PRJNA827593_P_NODE_47501_length_291_cov_2.146789_g47202_i0 PRJNA827593 47501 291 2.146789 6.24715599 Rhabditida 6236 Nematoda Nematoda 91.7 3.86e-19   NR KHN87151.1 6265 g47202 i0 51.7 7.17525773195876 87 39 89.7 1 24 284 49 132 KHN87151.1 Serine/threonine-protein kinase MAK [Toxocara canis] diamond 2088 92.4 0.992424242424242 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
27907114 27907114 PRJNA827593_P_NODE_56205_length_264_cov_1.612565_g55906_i0 PRJNA827593 56205 264 1.612565 4.2571716 Aphelenchoides besseyi 269767 Nematoda Nematoda 49.3 1.95e-4   NR KAI6195623.1 269767 g55906 i0 48.9 1.60227272727273 47 24 53.4 0 1 141 42 88 KAI6195623.1 hypothetical protein M3Y94_01009000 [Aphelenchoides besseyi] diamond 423 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
30758290 30758290 PRJNA827593_P_NODE_41454_length_315_cov_0.954545_g41155_i0 PRJNA827593 41454 315 0.954545 3.00681675 Rhabditida 6236 Nematoda Nematoda 67 2.42e-10   NR QWX95791.1 6248 g41155 i0 48 3.46666666666667 50 26 47.6 0 229 80 172 221 QWX95791.1 Rieske-like oxygenase [Strongyloides stercoralis] diamond 1092 67.4 0.99406528189911 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides stercoralis
31137066 31137066 PRJNA827593_P_NODE_21395_length_458_cov_1.449351_g21097_i0 PRJNA827593 21395 458 1.449351 6.63802758 Onchocercidae 6296 Nematoda Nematoda 47.8 0.00634   NR XP_001892464.2 6279 g21097 i0 36.7 2.88864628820961 49 31 32.1 0 327 181 1004 1052 XP_001892464.2 SET domain containing protein [Brugia malayi] diamond 1323 48.1 0.993762993762994 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
32425728 32425728 PRJNA827593_P_NODE_24999_length_420_cov_1.109510_g24700_i0 PRJNA827593 24999 420 1.10951 4.659942 Anisakis simplex 6269 Nematoda Nematoda 44.7 0.0403   NR VDK44075.1 6269 g24700 i0 27.6 0.907142857142857 127 83 89.3 3 43 417 54 173 VDK44075.1 unnamed protein product, partial [Anisakis simplex] diamond 381 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;