RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA827593" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA827593 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26737532 26737532 PRJNA827593_P_NODE_34821_length_347_cov_1.948905_g34522_i0 PRJNA827593 34821 347 1.948905 6.76270035 Polysphondylium violaceum 133409 Evosea other_Eukaryota 75.9 2.93e-13   NR KAF2072033.1 133409 g34522 i0 36.1 1.02881844380403 119 59 99.4 2 347 3 408 513 KAF2072033.1 hypothetical protein CYY_006644 [Polysphondylium violaceum] diamond 357 75.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
27252689 27252689 PRJNA827593_P_NODE_54983_length_267_cov_2.762887_g54684_i0 PRJNA827593 54983 267 2.762887 7.37690829 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 94 6.120000000000001e-21   NR XP_646934.1 352472 g54684 i0 53.4 1.97752808988764 88 40 98.9 1 266 3 137 223 XP_646934.1 hypothetical protein DDB_G0268970 [Dictyostelium discoideum AX4] diamond 528 94 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
27434046 27434046 PRJNA827593_P_NODE_9383_length_725_cov_1.763804_g9094_i0 PRJNA827593 9383 725 1.763804 12.787579 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 97.4 5.38e-19   NR KAH3743940.1 1580589 g9094 i0 24.9 1.43172413793103 346 155 99.7 5 1 723 1260 1605 KAH3743940.1 RNA ligase, T4 RnlA family protein [Pelomyxa schiedti] diamond 1038 97.4 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
27591842 27591842 PRJNA827593_P_NODE_49284_length_285_cov_1.905660_g48985_i0 PRJNA827593 49284 285 1.90566 5.431131 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62.4 7.5e-9   NR XP_004333053.1 1257118 g48985 i0 34.4 0.978947368421053 93 58 94.7 2 276 7 328 420 XP_004333053.1 rieske [2fe2s] domain containing protein [Acanthamoeba castellanii str. Neff] diamond 279 62.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28444260 28444260 PRJNA827593_P_NODE_27806_length_395_cov_1.180124_g27507_i0 PRJNA827593 27806 395 1.180124 4.6614898 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 87.4 4.97e-17   NR PRP85784.1 1890364 g27507 i0 48.9 0.713924050632911 94 45 69.1 2 104 376 915 1008 PRP85784.1 hypothetical protein PROFUN_05976 [Planoprotostelium fungivorum] diamond 282 87.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28759807 28759807 PRJNA827593_P_NODE_42047_length_312_cov_1.878661_g41748_i0 PRJNA827593 42047 312 1.878661 5.86142232 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 72 4.53e-12   NR PRP79649.1 1890364 g41748 i0 45.1 9.49038461538461 82 41 75 1 236 3 1195 1276 PRP79649.1 hypothetical protein PROFUN_10549 [Planoprotostelium fungivorum] diamond 2961 72 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29139022 29139022 PRJNA827593_P_NODE_36349_length_339_cov_1.157895_g36050_i0 PRJNA827593 36349 339 1.157895 3.92526405 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52.4 4.34e-5   NR XP_004338880.1 1257118 g36050 i0 42.9 0.433628318584071 49 28 43.4 0 151 5 41 89 XP_004338880.1 DOM3 exoribonuclease, putative [Acanthamoeba castellanii str. Neff] diamond 147 52.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31508401 31508401 PRJNA827593_P_NODE_47576_length_291_cov_1.678899_g47277_i0 PRJNA827593 47576 291 1.678899 4.88559609 Polysphondylium violaceum 133409 Evosea other_Eukaryota 54.7 4.2e-6   NR KAF2073367.1 133409 g47277 i0 65.7 0.360824742268041 35 12 36.1 0 75 179 405 439 KAF2073367.1 hypothetical protein CYY_005312 [Polysphondylium violaceum] diamond 105 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
32077680 32077680 PRJNA827593_P_NODE_68978_length_234_cov_2.223602_g68679_i0 PRJNA827593 68978 234 2.223602 5.20322868 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 47.4 7.4e-4   NR PRP89756.1 1890364 g68679 i0 40 0.833333333333333 65 34 83.3 1 202 8 168 227 PRP89756.1 hypothetical protein PROFUN_00098 [Planoprotostelium fungivorum] diamond 195 47.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32236200 32236200 PRJNA827593_P_NODE_37878_length_331_cov_1.492248_g37579_i0 PRJNA827593 37878 331 1.492248 4.93934088 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 57.8 5.66e-7   NR PRP80831.1 1890364 g37579 i0 47.5 0.552870090634441 61 32 55.3 0 95 277 297 357 PRP80831.1 hypothetical protein PROFUN_11246 [Planoprotostelium fungivorum] diamond 183 57.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32583994 32583994 PRJNA827593_P_NODE_52079_length_276_cov_1.517241_g51780_i0 PRJNA827593 52079 276 1.517241 4.18758516 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 100 5.51e-23   NR KAH3759660.1 1580589 g51780 i0 53.5 2.71739130434783 86 40 93.5 0 259 2 115 200 KAH3759660.1 hypothetical protein Pelo_8558 [Pelomyxa schiedti] diamond 750 100 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;