RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA826497" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA826497 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26873575 26873575 PRJNA826497_S_NODE_13121_length_172_cov_7.561151_g13081_i0 PRJNA826497 13121 172 7.561151 13.00517972 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.00286   NR KAG1691241.1 4784 g13081 i0 44.9 4.27325581395349 49 27 85.5 0 149 3 249 297 KAG1691241.1 hypothetical protein DVH05_027103 [Phytophthora capsici] diamond 735 44.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
29305131 29305131 PRJNA826497_S_NODE_8329_length_197_cov_6.024390_g8289_i0 PRJNA826497 8329 197 6.02439 11.8680483 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 80.1 9.38e-17   NR DBA01172.1 4803 g8289 i0 77.4 10.248730964467 53 12 80.7 0 9 167 137 189 DBA01172.1 TPA: hypothetical protein N0F65_002307 [Lagenidium giganteum] diamond 2019 80.9 0.990111248454882 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
32276326 32276326 PRJNA826497_S_NODE_6918_length_208_cov_3.948571_g6878_i0 PRJNA826497 6918 208 3.948571 8.21302768 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.00762   NR KAF1327902.1 82926 g6878 i0 54.2 1.3125 48 14 57.7 2 200 81 176 223 KAF1327902.1 hypothetical protein FI667_g7227, partial [Globisporangium splendens] diamond 273 43.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;