RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA825466" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA825466 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27275787 27275787 PRJNA825466_P_NODE_12163_length_274_cov_1.502488_g12062_i0 PRJNA825466 12163 274 1.502488 4.11681712 Chloroflexota bacterium 2026724 Bacteria Bacteria 41.2 0.0295   NR MCH7739436.1 2026724 g12062 i0 39.2 0.81021897810219 74 33 75.5 4 62 268 6 72 MCH7739436.1 hypothetical protein [Chloroflexota bacterium] diamond 222 41.2 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27979077 27979077 PRJNA825466_P_NODE_16585_length_251_cov_0.865169_g16484_i0 PRJNA825466 16585 251 0.865169 2.17157419 root 1 Root_unresolved Root_unresolved 49.3 2.07e-4   NR MCL0090175.1 2026734 g16484 i0 37.5 4.43426294820717 72 42 82.5 2 239 33 1448 1519 MCL0090175.1 carboxypeptidase regulatory-like domain-containing protein [Dehalococcoidia bacterium] diamond 1113 49.7 0.991951710261569 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
30212275 30212275 PRJNA825466_P_NODE_23272_length_245_cov_1.732558_g23171_i0 PRJNA825466 23272 245 1.732558 4.2447671 Thermanaerothrix daxensis 869279 Bacteria Bacteria 42.7 0.0311   NR WP_054520173.1 869279 g23171 i0 36.8 0.83265306122449 68 39 83.3 2 30 233 33 96 WP_054520173.1 hypothetical protein [Thermanaerothrix daxensis] diamond 204 42.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Thermanaerothrix Thermanaerothrix daxensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;