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contig_metadata

25 rows where analysis = "diamond", bioproject = "PRJNA825466" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 25 ✖

tax_kingdom 1

bioproject 1

  • PRJNA825466 · 25 ✖

analysis 1

  • diamond · 25 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4648798 4648798 PRJNA825466_P_NODE_17644_length_250_cov_0.870056_g17543_i0 PRJNA825466 17644 250 0.870056 2.17514 Brevibacterium mcbrellneri 53363 Bacteria Bacteria 173 4.53e-51   NR WP_005882029.1 53363 g17543 i0 100 0.996 83 0 99.6 0 250 2 65 147 WP_005882029.1 succinyl-diaminopimelate desuccinylase [Brevibacterium mcbrellneri] diamond 249 173 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium mcbrellneri
4648842 4648842 PRJNA825466_P_NODE_29024_length_241_cov_0.916667_g28923_i0 PRJNA825466 29024 241 0.916667 2.20916747 Yimella lutea 587872 Bacteria Bacteria 172 6.68e-50   NR WP_141927259.1 587872 g28923 i0 100 0.995850622406639 80 0 99.6 0 2 241 359 438 WP_141927259.1 PIG-L family deacetylase [Yimella lutea] diamond 240 172 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Yimella Yimella lutea
11024126 11024126 PRJNA825466_P_NODE_17289_length_250_cov_1.740113_g17188_i0 PRJNA825466 17289 250 1.740113 4.3502825 Iamia 467975 Bacteria Bacteria 115 1.54e-28   NR HEU5149848.1 2722710 g17188 i0 63.9 1.992 83 30 99.6 0 2 250 122 204 HEU5149848.1 geranylgeranyl reductase family protein [Iamia sp.] diamond 498 115 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Iamiaceae Iamia Iamia sp.
13573947 13573947 PRJNA825466_P_NODE_13011_length_269_cov_1.571429_g12910_i0 PRJNA825466 13011 269 1.571429 4.22714401 Enemella evansiae 2016499 Bacteria Bacteria 172 1.05e-50   NR WP_094404689.1 2016499 g12910 i0 100 0.992565055762082 89 0 99.3 0 269 3 2 90 WP_094404689.1 membrane protein insertase YidC [Enemella evansiae] diamond 267 172 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Enemella Enemella evansiae
27339057 27339057 PRJNA825466_P_NODE_3963_length_382_cov_1.304207_g3862_i0 PRJNA825466 3963 382 1.304207 4.98207074 Micromonosporaceae bacterium 1873464 Bacteria Bacteria 57 1.79e-6   NR MDT5026064.1 1873464 g3862 i0 35 0.965968586387435 123 64 96.6 4 374 6 566 672 MDT5026064.1 hypothetical protein [Micromonosporaceae bacterium] diamond 369 57 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae   Micromonosporaceae bacterium
27370847 27370847 PRJNA825466_P_NODE_12543_length_272_cov_1.221106_g12442_i0 PRJNA825466 12543 272 1.221106 3.32140832 Actinomycetota bacterium 2900548 Bacteria Bacteria 89.4 7.55e-19   NR MDQ3895293.1 2900548 g12442 i0 86.7 2.94485294117647 45 6 49.6 0 137 271 3 47 MDQ3895293.1 sugar phosphate isomerase/epimerase [Actinomycetota bacterium] diamond 801 89.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27591767 27591767 PRJNA825466_P_NODE_23104_length_246_cov_0.890173_g23003_i0 PRJNA825466 23104 246 0.890173 2.18982558 Corynebacterium parakroppenstedtii 2828363 Bacteria Bacteria 42.4 0.0116   NR WP_236882086.1 2828363 g23003 i0 44.7 0.573170731707317 47 26 57.3 0 231 91 47 93 WP_236882086.1 hypothetical protein, partial [Corynebacterium parakroppenstedtii] diamond 141 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium parakroppenstedtii
27812818 27812818 PRJNA825466_P_NODE_12864_length_270_cov_1.553299_g12763_i0 PRJNA825466 12864 270 1.553299 4.1939073 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 55.1 2.06e-6   NR MBV9445290.1 2339230 g12763 i0 46.3 2.12222222222222 67 33 72.2 2 195 1 201 266 MBV9445290.1 hypothetical protein [Streptosporangiaceae bacterium] diamond 573 55.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
27875647 27875647 PRJNA825466_P_NODE_5965_length_335_cov_0.858779_g5864_i0 PRJNA825466 5965 335 0.858779 2.87690965 Actinomadura nitritigenes 134602 Bacteria Bacteria 44.3 0.0295   NR WP_208265424.1 134602 g5864 i0 39.2 0.707462686567164 79 39 69 3 55 285 273 344 WP_208265424.1 PrsW family glutamic-type intramembrane protease [Actinomadura nitritigenes] diamond 237 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura nitritigenes
28073725 28073725 PRJNA825466_P_NODE_10545_length_284_cov_1.459716_g10444_i0 PRJNA825466 10545 284 1.459716 4.14559344 Corynebacterium 1716 Bacteria Bacteria 85.9 3.9e-17   NR WP_071057432.1 38289 g10444 i0 82.1 2.95774647887324 56 10 59.2 0 189 22 1 56 WP_071057432.1 hypothetical protein [Corynebacterium jeikeium] diamond 840 85.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium
28547698 28547698 PRJNA825466_P_NODE_13047_length_269_cov_1.357143_g12946_i0 PRJNA825466 13047 269 1.357143 3.65071467 Bacteria 2 Bacteria Bacteria 111 2.32e-27   NR WP_101386122.1 1938858 g12946 i0 62.8 4.817843866171 86 32 95.9 0 11 268 151 236 WP_101386122.1 carbamate kinase [Streptomyces sp. TLI_146] diamond 1296 112 0.991071428571429 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TLI_146
28696863 28696863 PRJNA825466_P_NODE_27567_length_242_cov_0.911243_g27466_i0 PRJNA825466 27567 242 0.911243 2.20520806 Corynebacterium jeikeium 38289 Bacteria Bacteria 80.1 2.57e-15   NR WP_034985158.1 38289 g27466 i0 60.5 0.942148760330578 76 18 94.2 2 228 1 50 113 WP_034985158.1 membrane protein [Corynebacterium jeikeium] diamond 228 80.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium
28854357 28854357 PRJNA825466_P_NODE_26388_length_243_cov_0.905882_g26287_i0 PRJNA825466 26388 243 0.905882 2.20129326 Nocardioides sp. 35761 Bacteria Bacteria 42.7 0.016   NR WP_329707424.1 35761 g26287 i0 35.3 0.62962962962963 51 33 63 0 219 67 2 52 WP_329707424.1 SRPBCC family protein [Nocardioides sp.] diamond 153 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
29170406 29170406 PRJNA825466_P_NODE_20809_length_247_cov_13.701149_g20708_i0 PRJNA825466 20809 247 13.701149 33.84183803 Corynebacterium parakroppenstedtii 2828363 Bacteria Bacteria 47.4 1.31e-4   NR WP_236882086.1 2828363 g20708 i0 47.8 0.558704453441296 46 24 55.9 0 232 95 47 92 WP_236882086.1 hypothetical protein, partial [Corynebacterium parakroppenstedtii] diamond 138 47.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium parakroppenstedtii
29833313 29833313 PRJNA825466_P_NODE_26711_length_243_cov_0.905882_g26610_i0 PRJNA825466 26711 243 0.905882 2.20129326 Rhodococcus sp. NPDC 3346536 Bacteria Bacteria 79 6.75e-15   NR WP_378578527.1 3346536 g26610 i0 53.7 1.01234567901235 82 36 100 2 243 1 110 190 WP_378578527.1 prolyl oligopeptidase family serine peptidase [Rhodococcus sp. NPDC058521] diamond 246 79 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. NPDC058521
30023043 30023043 PRJNA825466_P_NODE_22851_length_246_cov_0.890173_g22750_i0 PRJNA825466 22851 246 0.890173 2.18982558 Corynebacterium parakroppenstedtii 2828363 Bacteria Bacteria 50.4 8.22e-6   NR WP_236882086.1 2828363 g22750 i0 54.8 0.51219512195122 42 19 51.2 0 216 91 52 93 WP_236882086.1 hypothetical protein, partial [Corynebacterium parakroppenstedtii] diamond 126 50.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium parakroppenstedtii
30663401 30663401 PRJNA825466_P_NODE_20553_length_248_cov_0.880000_g20452_i0 PRJNA825466 20553 248 0.88 2.1824 Bacillati 1783272 Bacteria Bacteria 86.3 1.02e-17   NR MCB0864022.1 1909295 g20452 i0 54.3 4.63306451612903 81 36 98 1 6 248 115 194 MCB0864022.1 intradiol ring-cleavage dioxygenase [Solirubrobacterales bacterium] diamond 1149 86.3 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
30686214 30686214 PRJNA825466_P_NODE_10293_length_286_cov_1.361502_g10192_i0 PRJNA825466 10293 286 1.361502 3.89389572 Candidatus Yaniella excrementavium 2838771 Bacteria Bacteria 191 1.0999999999999998e-56   NR HIY86692.1 2838771 g10192 i0 98.9 0.996503496503496 95 1 99.7 0 286 2 20 114 HIY86692.1 YdiU family protein [Candidatus Yaniella excrementavium] diamond 285 191 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Yaniella Candidatus Yaniella excrementavium
30970844 30970844 PRJNA825466_P_NODE_22414_length_246_cov_0.890173_g22313_i0 PRJNA825466 22414 246 0.890173 2.18982558 Promicromonospora umidemergens 629679 Bacteria Bacteria 152 4.29e-41   NR WP_253871511.1 629679 g22313 i0 84 1.97560975609756 81 13 98.8 0 244 2 327 407 WP_253871511.1 calcineurin-like phosphoesterase C-terminal domain-containing protein [Promicromonospora umidemergens] diamond 486 152 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Promicromonospora Promicromonospora umidemergens
31381792 31381792 PRJNA825466_P_NODE_28096_length_241_cov_1.702381_g27995_i0 PRJNA825466 28096 241 1.702381 4.10273821 Arachnia sp. 2801846 Bacteria Bacteria 43.1 0.0265   NR HOA25975.1 2801846 g27995 i0 53.2 0.5850622406639 47 21 58.5 1 57 197 599 644 HOA25975.1 hypothetical protein [Arachnia sp.] diamond 141 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Arachnia Arachnia sp.
31444932 31444932 PRJNA825466_P_NODE_23236_length_245_cov_2.546512_g23135_i0 PRJNA825466 23236 245 2.546512 6.2389544 Allokutzneria oryzae 1378989 Bacteria Bacteria 70.9 1.25e-12   NR WP_377859761.1 1378989 g23135 i0 49.4 7.60408163265306 83 36 94.3 2 244 14 126 208 WP_377859761.1 glycoside hydrolase family 75 protein [Allokutzneria oryzae] diamond 1863 70.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Allokutzneria Allokutzneria oryzae
31444934 31444934 PRJNA825466_S_NODE_2036_length_241_cov_0.916667_g2030_i0 PRJNA825466 2036 241 0.916667 2.20916747 Micromonospora zhanjiangensis 1522057 Bacteria Bacteria 90.9 6.85e-20   NR MFD0823276.1 1522057 g2030 i0 51.3 0.946058091286307 76 37 94.6 0 11 238 1 76 MFD0823276.1 replication initiation factor domain-containing protein [Micromonospora zhanjiangensis] diamond 228 90.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora zhanjiangensis
31919396 31919396 PRJNA825466_P_NODE_19937_length_248_cov_0.880000_g19836_i0 PRJNA825466 19937 248 0.88 2.1824 Amycolatopsis sp. VS83 37632 Bacteria Bacteria 52.4 4.62e-6   NR WP_409186722.1 2652442 g19836 i0 44.9 0.834677419354839 69 30 78.6 4 195 1 56 120 WP_409186722.1 HNH endonuclease signature motif containing protein [Amycolatopsis sp. VS8301801F10] diamond 207 52.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp. VS8301801F10
32331069 32331069 PRJNA825466_P_NODE_27739_length_242_cov_0.911243_g27638_i0 PRJNA825466 27739 242 0.911243 2.20520806 Cutibacterium acnes 1747 Bacteria Bacteria 40.4 0.0417   NR MES6266278.1 1747 g27638 i0 76.2 0.260330578512397 21 5 26 0 63 1 13 33 MES6266278.1 hypothetical protein [Cutibacterium acnes] diamond 63 40.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
32741324 32741324 PRJNA825466_P_NODE_15440_length_255_cov_2.258242_g15339_i0 PRJNA825466 15440 255 2.258242 5.7585171 Pseudoclavibacter sp. 1915061 Bacteria Bacteria 43.5 0.0192   NR MFT8636664.1 1915061 g15339 i0 39.1 0.811764705882353 69 35 80 2 208 5 92 154 MFT8636664.1 type 1 glutamine amidotransferase [Pseudoclavibacter sp.] diamond 207 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pseudoclavibacter Pseudoclavibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;