RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA816527" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA816527 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5922623 5922623 PRJNA816527_P_NODE_16705_length_251_cov_1.460674_g16655_i0 PRJNA816527 16705 251 1.460674 3.66629174 Pseudomonadati 3379134 Bacteria Bacteria 128 2.15e-34   NR MDQ8036280.1 1411316 g16655 i0 88.3 1.8406374501992 77 9 92 0 5 235 128 204 MDQ8036280.1 M48 family metallopeptidase [Pedobacter sp.] diamond 462 129 0.992248062015504 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp.
27433928 27433928 PRJNA816527_P_NODE_6603_length_399_cov_2.340491_g6553_i0 PRJNA816527 6603 399 2.340491 9.33855909 Phocaeicola vulgatus 821 Bacteria Bacteria 134 1.21e-37   NR WP_050229787.1 821 g6553 i0 99.2 0.954887218045113 127 1 95.5 0 12 392 1 127 WP_050229787.1 hypothetical protein [Phocaeicola vulgatus] diamond 381 134 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;