contig_metadata
14 rows where analysis = "diamond", bioproject = "PRJNA816047" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25600170 | 25600170 | PRJNA816047b_S_NODE_53809_length_240_cov_26412.227545_g51497_i0 | PRJNA816047 | 53809 | 240 | 26412.227545 | 63389.346108 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 83.2 | 1.82e-16 | NR | MDR1618050.1 | 166 | g51497 | i0 | 84.1 | 1.975 | 44 | 7 | 55 | 0 | 3 | 134 | 98 | 141 | MDR1618050.1 hypothetical protein [Treponema sp.] | diamond | 474 | 84 | 0.990476190476191 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 32938436 | 32938436 | PRJNA816047a_S_NODE_63425_length_266_cov_2.378238_g60765_i0 | PRJNA816047 | 63425 | 266 | 2.378238 | 6.32611308 | Treponema endosymbiont of Eucomonympha sp. | 1580831 | Bacteria | Bacteria | 172 | 2.94e-53 | NR | WP_187149558.1 | 1580831 | g60765 | i0 | 98.8 | 0.958646616541353 | 85 | 1 | 95.9 | 0 | 258 | 4 | 21 | 105 | WP_187149558.1 alginate export family protein, partial [Treponema endosymbiont of Eucomonympha sp.] | diamond | 255 | 172 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema endosymbiont of Eucomonympha sp. | ||
| 32956481 | 32956481 | PRJNA816047d_S_NODE_60218_length_291_cov_1.172269_g58383_i0 | PRJNA816047 | 60218 | 291 | 1.172269 | 3.41130279 | Treponemataceae bacterium | 2854022 | Bacteria | Bacteria | 133 | 4.1600000000000003e-36 | NR | MCQ2579224.1 | 2854022 | g58383 | i0 | 62.8 | 0.969072164948454 | 94 | 35 | 96.9 | 0 | 8 | 289 | 66 | 159 | MCQ2579224.1 glucosamine-6-phosphate deaminase [Treponemataceae bacterium] | diamond | 282 | 133 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponemataceae bacterium | |||
| 33006991 | 33006991 | PRJNA816047b_S_NODE_38891_length_273_cov_2.500000_g36579_i0 | PRJNA816047 | 38891 | 273 | 2.5 | 6.825 | Treponema endosymbiont of Eucomonympha sp. | 1580831 | Bacteria | Bacteria | 169 | 7.23e-52 | NR | WP_187152238.1 | 1580831 | g36579 | i0 | 92.1 | 0.978021978021978 | 89 | 7 | 97.8 | 0 | 3 | 269 | 43 | 131 | WP_187152238.1 alginate export family protein, partial [Treponema endosymbiont of Eucomonympha sp.] | diamond | 267 | 169 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema endosymbiont of Eucomonympha sp. | ||
| 33040879 | 33040879 | PRJNA816047a_S_NODE_56956_length_280_cov_2.608696_g54296_i0 | PRJNA816047 | 56956 | 280 | 2.608696 | 7.3043488 | Treponema endosymbiont of Eucomonympha sp. | 1580831 | Bacteria | Bacteria | 141 | 8.29e-41 | NR | WP_228378758.1 | 1580831 | g54296 | i0 | 94.6 | 0.792857142857143 | 74 | 4 | 79.3 | 0 | 227 | 6 | 1 | 74 | WP_228378758.1 DoxX family protein, partial [Treponema endosymbiont of Eucomonympha sp.] | diamond | 222 | 141 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema endosymbiont of Eucomonympha sp. | ||
| 33041248 | 33041248 | PRJNA816047d_S_NODE_106132_length_247_cov_2.005155_g104297_i0 | PRJNA816047 | 106132 | 247 | 2.005155 | 4.95273285 | Treponema sp. | 166 | Bacteria | Bacteria | 53.5 | 5.01e-6 | NR | MCR5766223.1 | 166 | g104297 | i0 | 57.9 | 0.923076923076923 | 38 | 16 | 46.2 | 0 | 247 | 134 | 216 | 253 | MCR5766223.1 glucosamine-6-phosphate deaminase [Treponema sp.] | diamond | 228 | 53.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 33044638 | 33044638 | PRJNA816047d_S_NODE_64580_length_283_cov_2.334783_g62745_i0 | PRJNA816047 | 64580 | 283 | 2.334783 | 6.60743589 | Bacteria | 2 | Bacteria | Bacteria | 152 | 2.29e-40 | NR | MBS7294969.1 | 166 | g62745 | i0 | 80.5 | 22.5795053003534 | 87 | 17 | 92.2 | 0 | 281 | 21 | 488 | 574 | MBS7294969.1 GIY-YIG nuclease family protein [Treponema sp.] | diamond | 6390 | 152 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 33058051 | 33058051 | PRJNA816047a_S_NODE_8805_length_684_cov_5.689034_g6311_i0 | PRJNA816047 | 8805 | 684 | 5.689034 | 38.91299256 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 193 | 9.73e-60 | NR | MFO7729640.1 | 2053615 | g6311 | i0 | 95.1 | 0.451754385964912 | 103 | 3 | 45.2 | 1 | 473 | 165 | 1 | 101 | MFO7729640.1 hypothetical protein [Spirochaetia bacterium] | diamond | 309 | 193 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 33126354 | 33126354 | PRJNA816047b_S_NODE_13687_length_419_cov_8.445087_g11379_i0 | PRJNA816047 | 13687 | 419 | 8.445087 | 35.38491453 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 165 | 4.79e-50 | NR | MFO7729640.1 | 2053615 | g11379 | i0 | 97.6 | 0.608591885441527 | 85 | 0 | 60.9 | 1 | 417 | 163 | 19 | 101 | MFO7729640.1 hypothetical protein [Spirochaetia bacterium] | diamond | 255 | 165 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 33143077 | 33143077 | PRJNA816047a_S_NODE_24807_length_409_cov_5.699405_g22150_i0 | PRJNA816047 | 24807 | 409 | 5.699405 | 23.31056645 | Spirochaetaceae bacterium | 1898206 | Bacteria | Bacteria | 62.4 | 3.23e-8 | NR | MDR2490364.1 | 1898206 | g22150 | i0 | 47.8 | 1.01222493887531 | 69 | 35 | 50.6 | 1 | 20 | 226 | 481 | 548 | MDR2490364.1 ankyrin repeat domain-containing protein [Spirochaetaceae bacterium] | diamond | 414 | 62.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaetaceae bacterium | |||
| 33143522 | 33143522 | PRJNA816047b_S_NODE_56079_length_229_cov_3.211538_g53767_i0 | PRJNA816047 | 56079 | 229 | 3.211538 | 7.35442202 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 67 | 2.44e-12 | NR | MFO7729640.1 | 2053615 | g53767 | i0 | 62.5 | 0.62882096069869 | 48 | 18 | 62.9 | 0 | 227 | 84 | 54 | 101 | MFO7729640.1 hypothetical protein [Spirochaetia bacterium] | diamond | 144 | 67 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 33144091 | 33144091 | PRJNA816047d_S_NODE_69007_length_276_cov_1.215247_g67172_i0 | PRJNA816047 | 69007 | 276 | 1.215247 | 3.35408172 | Spirochaetales bacterium | 2026792 | Bacteria | Bacteria | 110 | 1.09e-25 | NR | MDD7200396.1 | 2026792 | g67172 | i0 | 72.5 | 3 | 69 | 19 | 75 | 0 | 209 | 3 | 55 | 123 | MDD7200396.1 family 43 glycosylhydrolase [Spirochaetales bacterium] | diamond | 828 | 110 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetales bacterium | ||||
| 33178008 | 33178008 | PRJNA816047d_S_NODE_18456_length_517_cov_3.331897_g16684_i0 | PRJNA816047 | 18456 | 517 | 3.331897 | 17.22590749 | Brachyspira pilosicoli | 52584 | Bacteria | Bacteria | 53.9 | 6.87e-5 | NR | WP_335762822.1 | 52584 | g16684 | i0 | 39.1 | 0.911025145067698 | 92 | 54 | 53.4 | 1 | 483 | 208 | 449 | 538 | WP_335762822.1 ankyrin repeat domain-containing protein [Brachyspira pilosicoli] | diamond | 471 | 53.9 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira pilosicoli | ||
| 33181231 | 33181231 | PRJNA816047d_S_NODE_56936_length_297_cov_1.368852_g55101_i0 | PRJNA816047 | 56936 | 297 | 1.368852 | 4.06549044 | root | 1 | Root_unresolved | Root_unresolved | 45.4 | 0.00787 | NR | WP_242004730.1 | 29522 | g55101 | i0 | 37.3 | 1.13131313131313 | 51 | 32 | 51.5 | 0 | 3 | 155 | 397 | 447 | WP_242004730.1 Eco57I restriction-modification methylase domain-containing protein [Brachyspira aalborgi] | diamond | 336 | 45.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira aalborgi |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;