RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA816047" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA816047 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32921824 32921824 PRJNA816047d_S_NODE_29377_length_393_cov_2.732353_g27545_i0 PRJNA816047 29377 393 2.732353 10.73814729 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 64.3 5.71e-9   NR XP_068359863.1 1144522 g27545 i0 34.1 1.34351145038168 91 51 67.2 2 386 123 381 465 XP_068359863.1 uncharacterized protein TRFO_05385 [Tritrichomonas foetus] diamond 528 64.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
33023943 33023943 PRJNA816047a_S_NODE_58260_length_277_cov_2.142157_g55600_i0 PRJNA816047 58260 277 2.142157 5.93377489 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 45.8 0.00252   NR XP_068350908.1 1144522 g55600 i0 52.9 1.77617328519856 34 16 36.8 0 2 103 80 113 XP_068350908.1 Protein disulfide-isomerase-like protein EhSep2 [Tritrichomonas foetus] diamond 492 45.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
33130021 33130021 PRJNA816047d_S_NODE_69615_length_275_cov_1.310811_g67780_i0 PRJNA816047 69615 275 1.310811 3.60473025 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 77.8 2.31e-14   NR XP_067769028.1 135588 g67780 i0 43.8 11.6072727272727 80 43 87.3 2 1 240 283 360 XP_067769028.1 AGC family protein kinase [Histomonas meleagridis] diamond 3192 77.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;