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contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA816047" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA816047 · 19 ✖

analysis 1

  • diamond · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25728155 25728155 PRJNA816047a_S_NODE_2698_length_1627_cov_4.083655_g827_i0 PRJNA816047 2698 1627 4.083655 66.44106685 Longimicrobium sp. 2029185 Bacteria Bacteria 536 7.509999999999998e-182   NR HEX8361269.1 2029185 g827 i0 57.1 0.929317762753534 504 202 91.6 6 1615 125 151 647 HEX8361269.1 TULIP family P47-like protein [Longimicrobium sp.] diamond 1512 536 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
25907039 25907039 PRJNA816047b_S_NODE_7291_length_547_cov_2.010549_g5035_i0 PRJNA816047 7291 547 2.010549 10.99770303 Pseudomonadati 3379134 Bacteria Bacteria 152 1.71e-42   NR HEY9228765.1 2026741 g5035 i0 73.4 2.07312614259598 94 25 51.6 0 388 107 97 190 HEY9228765.1 SMC-Scp complex subunit ScpB [Gemmatimonadaceae bacterium] diamond 1134 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26013704 26013704 PRJNA816047d_S_NODE_63516_length_285_cov_1.706897_g61681_i0 PRJNA816047 63516 285 1.706897 4.86465645 Longimicrobium sp. 2029185 Bacteria Bacteria 174 7.96e-51   NR HEX8212320.1 2029185 g61681 i0 92.6 0.989473684210526 94 7 98.9 0 284 3 317 410 HEX8212320.1 IS256 family transposase [Longimicrobium sp.] diamond 282 174 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
26136106 26136106 PRJNA816047a_S_NODE_2269_length_1992_cov_9.231371_g525_i0 PRJNA816047 2269 1992 9.231371 183.88891032 Longimicrobium sp. 2029185 Bacteria Bacteria 391 8.11e-122   NR HEX8361270.1 2029185 g525 i0 47 0.721385542168675 479 238 70.5 8 585 1988 1 474 HEX8361270.1 hypothetical protein [Longimicrobium sp.] diamond 1437 391 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
26137547 26137547 PRJNA816047a_S_NODE_39661_length_330_cov_20.182879_g37001_i0 PRJNA816047 39661 330 20.182879 66.6035007 Pseudomonadati 3379134 Bacteria Bacteria 94.4 2.2700000000000004e-21   NR GJG86747.1 2839016 g37001 i0 60.8 3.83636363636364 79 26 67.3 1 226 5 107 185 GJG86747.1 nitroreductase [Gemmatimonadetes bacterium T265] diamond 1266 94.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
26180420 26180420 PRJNA816047d_S_NODE_47341_length_319_cov_2.255639_g45506_i0 PRJNA816047 47341 319 2.255639 7.19548841 Longimicrobium sp. 2029185 Bacteria Bacteria 130 1.08e-34   NR HST58352.1 2029185 g45506 i0 61.5 2.93416927899687 104 40 97.8 0 4 315 27 130 HST58352.1 ABC transporter ATP-binding protein [Longimicrobium sp.] diamond 936 130 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
26543840 26543840 PRJNA816047a_S_NODE_19304_length_460_cov_3.439276_g16659_i0 PRJNA816047 19304 460 3.439276 15.8206696 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 109 2.9100000000000004e-26   NR MDB4917957.1 2026742 g16659 i0 46.9 0.958695652173913 147 78 95.9 0 1 441 17 163 MDB4917957.1 hypothetical protein [Gemmatimonadota bacterium] diamond 441 109 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
26543948 26543948 PRJNA816047a_S_NODE_20440_length_448_cov_2.229333_g17792_i0 PRJNA816047 20440 448 2.229333 9.98741184 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 153 1.9e-43   NR HYS70631.1 2026741 g17792 i0 81.4 0.575892857142857 86 16 57.6 0 3 260 148 233 HYS70631.1 VOC family protein [Gemmatimonadaceae bacterium] diamond 258 153 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26549179 26549179 PRJNA816047a_S_NODE_872_length_6648_cov_8.313308_g121_i0 PRJNA816047 872 6648 8.313308 552.66871584 Longimicrobium sp. 2029185 Bacteria Bacteria 415 1.54e-125   NR HEX8361267.1 2029185 g121 i0 52.2 0.203068592057762 450 203 20 5 1075 2406 1 444 HEX8361267.1 hypothetical protein [Longimicrobium sp.] diamond 1350 415 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
26556762 26556762 PRJNA816047d_S_NODE_45656_length_324_cov_0.948339_g43821_i0 PRJNA816047 45656 324 0.948339 3.07261836 Pseudomonadati 3379134 Bacteria Bacteria 101 1.04e-22   NR NIQ56021.1 2026742 g43821 i0 60 2.43518518518519 85 32 76.9 1 324 76 75 159 NIQ56021.1 glycoside hydrolase family 15 protein [Gemmatimonadota bacterium] diamond 789 102 0.990196078431373 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32955548 32955548 PRJNA816047a_S_NODE_2778_length_1576_cov_9.059880_g884_i0 PRJNA816047 2778 1576 9.05988 142.7837088 Longimicrobium sp. 2029185 Bacteria Bacteria 144 1.5999999999999998e-32   NR HEX8361270.1 2029185 g884 i0 34.3 0.671954314720812 353 191 61.1 9 25 987 460 803 HEX8361270.1 hypothetical protein [Longimicrobium sp.] diamond 1059 144 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32973451 32973451 PRJNA816047d_S_NODE_37162_length_352_cov_4.337793_g35327_i0 PRJNA816047 37162 352 4.337793 15.26903136 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 66.2 5.8e-10   NR MEN8144558.1 2026742 g35327 i0 48.3 1.02272727272727 60 31 51.1 0 3 182 279 338 MEN8144558.1 isocitrate/isopropylmalate family dehydrogenase [Gemmatimonadota bacterium] diamond 360 66.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32990700 32990700 PRJNA816047d_S_NODE_60467_length_290_cov_4.649789_g58632_i0 PRJNA816047 60467 290 4.649789 13.4843881 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.1 0.0435   NR MEJ2203386.1 2026742 g58632 i0 40 0.672413793103448 65 35 63.1 1 89 271 10 74 MEJ2203386.1 cyanophycinase [Gemmatimonadota bacterium] diamond 195 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
33027494 33027494 PRJNA816047a_S_NODE_74532_length_248_cov_0.880000_g71872_i0 PRJNA816047 74532 248 0.88 2.1824 FCB group 1783270 Bacteria Bacteria 43.1 0.0263   NR MFN2565871.1 2026741 g71872 i0 36.8 1.19758064516129 68 25 82.3 1 210 7 217 266 MFN2565871.1 pentapeptide repeat-containing protein [Gemmatimonadaceae bacterium] diamond 297 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
33109822 33109822 PRJNA816047d_S_NODE_42598_length_333_cov_1.525000_g40763_i0 PRJNA816047 42598 333 1.525 5.07825 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.3 0.0296   NR HEX9486771.1 2448054 g40763 i0 39.6 0.432432432432432 48 26 40.5 1 77 211 308 355 HEX9486771.1 TonB-dependent receptor [Gemmatimonadales bacterium] diamond 144 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
33126871 33126871 PRJNA816047d_S_NODE_44479_length_327_cov_2.208029_g42644_i0 PRJNA816047 44479 327 2.208029 7.22025483 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 127 9.25e-35   NR MBA3761339.1 2448054 g42644 i0 83.6 0.669724770642202 73 12 67 0 35 253 98 170 MBA3761339.1 IS3 family transposase [Gemmatimonadales bacterium] diamond 219 127 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
33127072 33127072 PRJNA816047d_S_NODE_76279_length_265_cov_2.080189_g74444_i0 PRJNA816047 76279 265 2.080189 5.51250085 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 126 4.52e-33   NR MDX2194577.1 2448054 g74444 i0 84.4 1.75471698113208 77 12 87.2 0 1 231 83 159 MDX2194577.1 sodium-dependent bicarbonate transport family permease [Gemmatimonadales bacterium] diamond 465 126 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
33129943 33129943 PRJNA816047d_S_NODE_14015_length_620_cov_1.835979_g12391_i0 PRJNA816047 14015 620 1.835979 11.3830698 Pseudomonadati 3379134 Bacteria Bacteria 162 2.3999999999999994e-46   NR HEY9228765.1 2026741 g12391 i0 75 1.94516129032258 100 25 48.4 0 337 38 97 196 HEY9228765.1 SMC-Scp complex subunit ScpB [Gemmatimonadaceae bacterium] diamond 1206 163 0.993865030674847 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
33181247 33181247 PRJNA816047d_S_NODE_65416_length_282_cov_1.087336_g63581_i0 PRJNA816047 65416 282 1.087336 3.06628752 Pseudomonadati 3379134 Bacteria Bacteria 84.7 1.71e-17   NR MBT5800270.1 2026742 g63581 i0 57.4 2.42553191489362 68 28 72.3 1 252 49 35 101 MBT5800270.1 hypothetical protein [Gemmatimonadota bacterium] diamond 684 84.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;