RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA816047" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA816047 · 15 ✖

analysis 1

  • diamond · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25740412 25740412 PRJNA816047d_S_NODE_43410_length_330_cov_3.169675_g41575_i0 PRJNA816047 43410 330 3.169675 10.4599275 Euglena gracilis 3039 Euglenozoa other_Eukaryota 65.5 9.68e-12   NR QLA09639.1 3039 g41575 i0 64.6 3.53636363636364 48 17 43.6 0 329 186 3 50 QLA09639.1 60S large subunit ribosomal protein eL39 [Euglena gracilis] diamond 1167 65.5 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
25908482 25908482 PRJNA816047d_S_NODE_68499_length_277_cov_0.879464_g66664_i0 PRJNA816047 68499 277 0.879464 2.43611528 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 66.6 2.22e-10   NR KAG8343329.1 5699 g66664 i0 55.1 25.7978339350181 78 35 84.5 0 43 276 97 174 KAG8343329.1 heat shock 70 kDa protein [Trypanosoma vivax] diamond 7146 66.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
26553302 26553302 PRJNA816047d_S_NODE_104320_length_248_cov_1.379487_g102485_i0 PRJNA816047 104320 248 1.379487 3.42112776 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 140 2.42e-37   NR AAF77119.1 3039 g102485 i0 82.9 32.7338709677419 82 14 99.2 0 248 3 273 354 AAF77119.1 Cbf5p [Euglena gracilis] diamond 8118 141 0.99290780141844 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
26553343 26553343 PRJNA816047d_S_NODE_106104_length_247_cov_2.190722_g104269_i0 PRJNA816047 106104 247 2.190722 5.41108334 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 120 4.779999999999999e-31   NR ACO50134.2 56452 g104269 i0 67.5 1.87044534412955 77 25 93.5 0 15 245 140 216 ACO50134.2 elongation factor-like, partial [Petalomonas cantuscygni] diamond 462 121 0.991735537190083 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas cantuscygni
26587823 26587823 PRJNA816047d_S_NODE_21688_length_467_cov_1210.536232_g19871_i0 PRJNA816047 21688 467 1210.536232 5653.20420344 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 78.6 1.29e-13   NR KAJ9462055.1 91374 g19871 i0 62.8 3.34689507494647 78 22 45.6 2 362 150 575 652 KAJ9462055.1 Heat shock 70 kDa protein [Diplonema papillatum] diamond 1563 78.6 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
32925079 32925079 PRJNA816047d_S_NODE_85225_length_259_cov_1.233010_g83390_i0 PRJNA816047 85225 259 1.23301 3.1934959 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 117 3.1000000000000003e-30   NR RNC30796.1 5693 g83390 i0 67.9 46.042471042471 78 25 90.3 0 26 259 98 175 RNC30796.1 putative eukaryotic translation initiation factor 6 (eIF-6), partial [Trypanosoma cruzi] diamond 11925 117 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
32956190 32956190 PRJNA816047d_S_NODE_17778_length_530_cov_3.683438_g16020_i0 PRJNA816047 17778 530 3.683438 19.5222214 Trypanosoma cruzi cruzi 85057 Euglenozoa other_Eukaryota 60.1 1.41e-7   NR PBJ68013.1 85057 g16020 i0 36.2 1.17169811320755 105 51 57.2 3 108 410 91 183 PBJ68013.1 terbinafine resistance locus protein (yip1) [Trypanosoma cruzi cruzi] diamond 621 60.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
32973298 32973298 PRJNA816047d_S_NODE_18706_length_512_cov_10.287582_g16928_i0 PRJNA816047 18706 512 10.287582 52.67241984 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 112 2.98e-25   NR KAJ9461372.1 91374 g16928 i0 41.7 0.703125 120 70 70.3 0 2 361 510 629 KAJ9461372.1 Proline dehydrogenase 1 [Diplonema papillatum] diamond 360 112 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
32990671 32990671 PRJNA816047d_S_NODE_54931_length_301_cov_2.213710_g53096_i0 PRJNA816047 54931 301 2.21371 6.6632671 Bodo saltans 75058 Euglenozoa other_Eukaryota 59.7 1.35e-8   NR CUG93482.1 75058 g53096 i0 62.5 1.19601328903654 40 15 39.9 0 21 140 116 155 CUG93482.1 ribosomal protein L27e, putative [Bodo saltans] diamond 360 59.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
33092689 33092689 PRJNA816047d_S_NODE_23070_length_450_cov_1.367758_g21244_i0 PRJNA816047 23070 450 1.367758 6.154911 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 61.6 1.25e-8   NR XP_028884450.1 67003 g21244 i0 27.3 0.853333333333333 128 83 85.3 2 442 59 38 155 XP_028884450.1 uncharacterized protein TM35_000081820 [Trypanosoma theileri] diamond 384 61.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
33095861 33095861 PRJNA816047d_S_NODE_44318_length_328_cov_0.905455_g42483_i0 PRJNA816047 44318 328 0.905455 2.9698924 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 50.4 7.27e-5   NR GET88363.1 5689 g42483 i0 40.3 3.69512195121951 72 43 65.9 0 324 109 63 134 GET88363.1 40S ribosomal protein S23, putative [Leishmania tarentolae] diamond 1212 50.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania tarentolae
33095868 33095868 PRJNA816047d_S_NODE_47086_length_320_cov_1.273408_g45251_i0 PRJNA816047 47086 320 1.273408 4.0749056 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 44.3 0.0263   NR KAJ9471459.1 91374 g45251 i0 28.4 1.59375 88 61 80.6 1 47 304 643 730 KAJ9471459.1 Pumilio-like protein 5 [Diplonema papillatum] diamond 510 44.3 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
33110064 33110064 PRJNA816047d_S_NODE_93078_length_254_cov_1.980100_g91243_i0 PRJNA816047 93078 254 1.9801 5.029454 Euglena gracilis 3039 Euglenozoa other_Eukaryota 53.5 2.52e-6   NR 6TDU_AH 3039 g91243 i0 37.9 0.779527559055118 66 41 78 0 4 201 109 174 6TDU_AH Chain AH, ATP synthase subunit delta [Euglena gracilis] diamond 198 53.5 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
33126895 33126895 PRJNA816047d_S_NODE_48647_length_316_cov_1.000000_g46812_i0 PRJNA816047 48647 316 1 3.16 Euglena gracilis 3039 Euglenozoa other_Eukaryota 116 7.729999999999999e-31   NR P40279.1 3039 g46812 i0 56 1.87974683544304 100 44 94.9 0 2 301 37 136 P40279.1 RecName: Full=Histone H2A [Euglena gracilis] diamond 594 116 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
33146977 33146977 PRJNA816047d_S_NODE_34599_length_364_cov_1.006431_g32764_i0 PRJNA816047 34599 364 1.006431 3.6634088400000002 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 153 2.95e-40   NR CCM19372.1 5670 g32764 i0 71.4 12.782967032967 91 26 75 0 319 47 628 718 CCM19372.1 Putative elongation factor 2 [Leishmania guyanensis] diamond 4653 153 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania guyanensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;