RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA816047" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA816047 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32938988 32938988 PRJNA816047d_S_NODE_23913_length_440_cov_11.167959_g22086_i0 PRJNA816047 23913 440 11.167959 49.1390196 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 112 1.89e-27   NR SPR00426.1 37360 g22086 i0 49.5 1.48636363636364 109 50 73.6 2 439 116 129 233 SPR00426.1 unnamed protein product [Plasmodiophora brassicae] diamond 654 112 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
33075379 33075379 PRJNA816047d_S_NODE_134069_length_227_cov_438.706897_g132234_i0 PRJNA816047 134069 227 438.706897 995.86465619 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 62.4 3.48e-9   NR SYZ47160.1 37360 g132234 i0 60 4.46696035242291 60 19 79.3 2 38 217 260 314 SYZ47160.1 2935d21f-87f2-4ee1-aefc-66d9a481369c [Plasmodiophora brassicae] diamond 1014 62.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;