RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA816047" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA816047 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25739610 25739610 PRJNA816047d_S_NODE_29498_length_392_cov_5.657817_g27666_i0 PRJNA816047 29498 392 5.657817 22.17864264 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 233 4.26e-74   NR CAD8102823.1 5886 g27666 i0 86.8 474.076530612245 121 16 92.6 0 4 366 25 145 CAD8102823.1 unnamed protein product [Paramecium primaurelia] diamond 185838 234 0.995726495726496 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
32924979 32924979 PRJNA816047d_S_NODE_17161_length_542_cov_8.670757_g15421_i0 PRJNA816047 17161 542 8.670757 46.99550294 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 76.6 6.57e-14   NR CAD8055348.1 5886 g15421 i0 31.3 3.01660516605166 134 92 74.2 0 541 140 31 164 CAD8055348.1 unnamed protein product [Paramecium primaurelia] diamond 1635 77 0.994805194805195 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
32925065 32925065 PRJNA816047d_S_NODE_76577_length_265_cov_1.136792_g74742_i0 PRJNA816047 76577 265 1.136792 3.0124988 root 1 Root_unresolved Root_unresolved 126 1.3499999999999999e-34   NR XP_001019714.4 312017 g74742 i0 75.7 5.13962264150943 74 18 83.8 0 1 222 110 183 XP_001019714.4 methionine-R-sulfoxide reductase [Tetrahymena thermophila SB210] diamond 1362 127 0.992125984251969 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
32939142 32939142 PRJNA816047d_S_NODE_44889_length_326_cov_1.461538_g43054_i0 PRJNA816047 44889 326 1.461538 4.76461388 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 54.3 8.5e-6   NR CAG9315931.1 1481888 g43054 i0 41.7 1.37116564417178 72 34 58.9 3 133 324 388 459 CAG9315931.1 unnamed protein product [Blepharisma stoltei] diamond 447 54.3 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
33024205 33024205 PRJNA816047b_S_NODE_44596_length_257_cov_2.456522_g42284_i0 PRJNA816047 44596 257 2.456522 6.31326154 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 48.5 3.18e-4   NR TNV78266.1 5974 g42284 i0 80.8 0.607003891050584 26 5 30.4 0 5 82 214 239 TNV78266.1 hypothetical protein FGO68_gene9047 [Halteria grandinella] diamond 156 48.5 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
33041594 33041594 PRJNA816047d_S_NODE_45772_length_323_cov_3.462963_g43937_i0 PRJNA816047 45772 323 3.462963 11.18537049 Paramecium pentaurelia 43138 SAR_Eukaryotes SAR_Eukaryotes 63.5 3.78e-9   NR CAD8205681.1 43138 g43937 i0 36.5 0.687306501547988 74 43 65 1 300 91 257 330 CAD8205681.1 unnamed protein product [Paramecium pentaurelia] diamond 222 63.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium pentaurelia
33061601 33061601 PRJNA816047d_S_NODE_27429_length_407_cov_8.248588_g25599_i0 PRJNA816047 27429 407 8.248588 33.57175316 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 131 9.76e-34   NR OMJ68875.1 5963 g25599 i0 63.5 7.0982800982801 96 35 70.8 0 405 118 295 390 OMJ68875.1 hypothetical protein SteCoe_33545 [Stentor coeruleus] diamond 2889 131 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
33144048 33144048 PRJNA816047d_S_NODE_62863_length_286_cov_2.085837_g61028_i0 PRJNA816047 62863 286 2.085837 5.96549382 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 53.5 9.95e-6   NR XP_004037227.1 5932 g61028 i0 50 0.912587412587413 42 21 44.1 0 29 154 543 584 XP_004037227.1 vacuolar sorting protein, putative [Ichthyophthirius multifiliis] diamond 261 53.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
33164003 33164003 PRJNA816047d_S_NODE_65792_length_281_cov_2.070175_g63957_i0 PRJNA816047 65792 281 2.070175 5.81719175 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 82.8 5e-16   NR CAD8082597.1 5886 g63957 i0 44.6 10.6975088967972 92 51 98.2 0 280 5 1438 1529 CAD8082597.1 unnamed protein product [Paramecium primaurelia] diamond 3006 82.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;