RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA815356" and tax_phylum = "Thermomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermomicrobiota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA815356 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27568550 27568550 PRJNA815356_P_NODE_9684_length_248_cov_0.891429_g9521_i0 PRJNA815356 9684 248 0.891429 2.21074392 Bacteria 2 Bacteria Bacteria 124 2.22e-32   NR CAA9572231.1 1645740 g9521 i0 74.4 4.95967741935484 82 21 99.2 0 3 248 94 175 CAA9572231.1 MAG: Acetylspermidine deacetylase; Deacetylases, including yeast histone deacetylase and acetoin utilization protein [uncultured Thermomicrobiales bacterium] diamond 1230 124 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales     uncultured Thermomicrobiales bacterium
27591760 27591760 PRJNA815356_P_NODE_10024_length_246_cov_0.861272_g9861_i0 PRJNA815356 10024 246 0.861272 2.11872912 Thermomicrobiales bacterium 2482790 Bacteria Bacteria 111 3.24e-29   NR MFN8663246.1 2482790 g9861 i0 95.2 0.768292682926829 63 3 76.8 0 56 244 1 63 MFN8663246.1 Rrf2 family transcriptional regulator [Thermomicrobiales bacterium] diamond 189 111 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales     Thermomicrobiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;