RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA815356" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA815356 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25045488 25045488 PRJNA815356_P_NODE_8780_length_253_cov_1.516667_g8617_i0 PRJNA815356 8780 253 1.516667 3.83716751 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 137 1.67e-35   NR XP_002677473.1 5762 g8617 i0 86.9 0.99604743083004 84 11 99.6 0 253 2 5 88 XP_002677473.1 von Willebrand factor type A domain-containing protein [Naegleria gruberi] diamond 252 137 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27654895 27654895 PRJNA815356_P_NODE_10464_length_243_cov_1.494118_g10301_i0 PRJNA815356 10464 243 1.494118 3.63070674 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 73.6 4.88e-13   NR XP_002682034.1 5762 g10301 i0 76.3 0.938271604938272 76 17 92.6 1 242 18 27 102 XP_002682034.1 uncharacterized protein NAEGRDRAFT_78127 [Naegleria gruberi] diamond 228 73.6 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28096734 28096734 PRJNA815356_P_NODE_10345_length_244_cov_0.912281_g10182_i0 PRJNA815356 10345 244 0.912281 2.22596564 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 140 1.9799999999999997e-37   NR XP_002675532.1 5762 g10182 i0 95.1 0.995901639344262 81 4 99.6 0 244 2 158 238 XP_002675532.1 uncharacterized protein NAEGRDRAFT_80255 [Naegleria gruberi] diamond 243 140 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31096999 31096999 PRJNA815356_P_NODE_10155_length_245_cov_0.906977_g9992_i0 PRJNA815356 10155 245 0.906977 2.22209365 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 74.3 2.93e-13   NR CAG4719435.1 5763 g9992 i0 51.2 2.95102040816327 82 37 98 2 4 243 1252 1332 CAG4719435.1 unnamed protein product, partial [Naegleria fowleri] diamond 723 74.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;