RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA815356" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA815356 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28885972 28885972 PRJNA815356_P_NODE_8848_length_253_cov_0.866667_g8685_i0 PRJNA815356 8848 253 0.866667 2.19266751 Ailuropoda melanoleuca 9646 Chordata Chordata 42.7 0.0421   NR XP_019653845.1 9646 g8685 i0 34.4 1.44664031620553 61 38 72.3 1 231 49 207 265 XP_019653845.1 UDP-glucuronosyltransferase 1-10 isoform X3 [Ailuropoda melanoleuca] diamond 366 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ailuropoda Ailuropoda melanoleuca
29770012 29770012 PRJNA815356_P_NODE_5571_length_305_cov_2.353448_g5408_i0 PRJNA815356 5571 305 2.353448 7.1780164 Polypterus senegalus 55291 Chordata Chordata 43.5 0.0155   NR KAG2471189.1 55291 g5408 i0 57.1 0.344262295081967 35 15 34.4 0 148 252 92 126 KAG2471189.1 TCB1 transposase, partial [Polypterus senegalus] diamond 105 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31539932 31539932 PRJNA815356_P_NODE_3816_length_355_cov_2.304965_g3653_i0 PRJNA815356 3816 355 2.304965 8.18262575 Erpetoichthys calabaricus 27687 Chordata Chordata 130 3.41e-34   NR XP_051791274.1 27687 g3653 i0 76.7 6.91267605633803 90 20 75.2 1 68 334 115 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2454 130 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;