RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA815356" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 4 ✖

bioproject 1

  • PRJNA815356 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27148819 27148819 PRJNA815356_P_NODE_3502_length_367_cov_4.217687_g3339_i0 PRJNA815356 3502 367 4.217687 15.47891129 Pisum sativum 3888 Plants Plants 123 6.03e-33   NR CAL5213006.1 3888 g3339 i0 87.4 0.907356948228883 111 12 90.7 1 2 334 55 163 CAL5213006.1 unnamed protein product [Pisum sativum] diamond 333 123 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lathyrus Lathyrus oleraceus
29359790 29359790 PRJNA815356_P_NODE_9789_length_247_cov_0.896552_g9626_i0 PRJNA815356 9789 247 0.896552 2.21448344 Lolium multiflorum 4521 Plants Plants 142 4.46e-37   NR KAK1650776.1 4521 g9626 i0 80.5 6.97165991902834 82 16 99.6 0 2 247 514 595 KAK1650776.1 hypothetical protein QYE76_068581 [Lolium multiflorum] diamond 1722 142 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium multiflorum
30749560 30749560 PRJNA815356_P_NODE_7314_length_273_cov_0.985000_g7151_i0 PRJNA815356 7314 273 0.985 2.68905 Zea mays 4577 Plants Plants 46.2 0.00322   NR AAL76006.1 4577 g7151 i0 46.8 0.681318681318681 62 18 59.3 2 51 212 32 86 AAL76006.1 putative retrotransposon protein [Zea mays] diamond 186 46.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
32362601 32362601 PRJNA815356_P_NODE_10159_length_245_cov_0.906977_g9996_i0 PRJNA815356 10159 245 0.906977 2.22209365 Pisum sativum 3888 Plants Plants 45.1 0.00584   NR XP_050890365.1 3888 g9996 i0 54.5 0.404081632653061 33 15 40.4 0 177 79 630 662 XP_050890365.1 uncharacterized protein LOC127095765 [Pisum sativum] diamond 99 45.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lathyrus Lathyrus oleraceus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;