RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA814235" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA814235 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25044540 25044540 PRJNA814235_P_NODE_64120_length_238_cov_1.517413_g62725_i0 PRJNA814235 64120 238 1.517413 3.61144294 Candidatus Cybelea sp. 2952917 Bacteria Bacteria 151 8.679999999999997e-42   NR HEY6327174.1 2952917 g62725 i0 87.2 8.84873949579832 78 10 98.3 0 3 236 62 139 HEY6327174.1 DUF1254 domain-containing protein [Candidatus Cybelea sp.] diamond 2106 151 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Cybelea Candidatus Cybelea sp.
26737470 26737470 PRJNA814235_P_NODE_96881_length_203_cov_2.620482_g95486_i0 PRJNA814235 96881 203 2.620482 5.31957846 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 45.4 0.0024   NR MFA5507191.1 3107663 g95486 i0 88 0.738916256157635 25 3 36.9 0 128 202 191 215 MFA5507191.1 branched-chain amino acid ABC transporter permease [Vulcanimicrobiota bacterium] diamond 150 45.4 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
27054513 27054513 PRJNA814235_P_NODE_83702_length_207_cov_5.523529_g82307_i0 PRJNA814235 83702 207 5.523529 11.43370503 Candidatus Lustribacter sp. 3069335 Bacteria Bacteria 42 0.0412   NR HEX2705872.1 3069335 g82307 i0 48.5 0.985507246376812 68 29 94.2 3 2 196 7 71 HEX2705872.1 hypothetical protein [Candidatus Lustribacter sp.] diamond 204 42 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Lustribacter Candidatus Lustribacter sp.
31634569 31634569 PRJNA814235_P_NODE_74976_length_220_cov_1.573770_g73581_i0 PRJNA814235 74976 220 1.57377 3.462294 Candidatus Cybelea sp. 2952917 Bacteria Bacteria 108 9.92e-27   NR HYM31177.1 2952917 g73581 i0 68.5 1.99090909090909 73 23 99.5 0 219 1 40 112 HYM31177.1 branched-chain amino acid ABC transporter permease [Candidatus Cybelea sp.] diamond 438 108 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Cybelea Candidatus Cybelea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;