RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA814235" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA814235 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29936793 29936793 PRJNA814235_P_NODE_104071_length_203_cov_2.265060_g102676_i0 PRJNA814235 104071 203 2.26506 4.5980718 Bacteria 2 Bacteria Bacteria 45.1 0.00339   NR MEI6423523.1 1932692 g102676 i0 81 0.931034482758621 21 4 31 0 12 74 131 151 MEI6423523.1 alpha-amylase family protein [Lentisphaerota bacterium] diamond 189 45.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
30410997 30410997 PRJNA814235_P_NODE_109073_length_203_cov_2.096386_g107678_i0 PRJNA814235 109073 203 2.096386 4.25566358 Bacteria 2 Bacteria Bacteria 45.8 0.00182   NR MEI8248428.1 1932692 g107678 i0 40.3 1.935960591133 67 35 99 1 3 203 458 519 MEI8248428.1 glycosyl hydrolase [Lentisphaerota bacterium] diamond 393 45.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32394055 32394055 PRJNA814235_P_NODE_91339_length_203_cov_3.162651_g89944_i0 PRJNA814235 91339 203 3.162651 6.42018153 Lentisphaerota bacterium 1932692 Bacteria Bacteria 52.8 6.46e-6   NR NLF22904.1 1932692 g89944 i0 100 0.354679802955665 24 0 35.5 0 2 73 402 425 NLF22904.1 DUF4838 domain-containing protein [Lentisphaerota bacterium] diamond 72 52.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;