RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA813520" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA813520 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27402123 27402123 PRJNA813520_S_NODE_3643_length_191_cov_12.135802_g3596_i0 PRJNA813520 3643 191 12.135802 23.17938182 Klebsiella pneumoniae 573 Bacteria Bacteria 58.5 5.8e-9   NR WP_416501348.1 573 g3596 i0 96.4 0.879581151832461 28 1 44 0 86 3 97 124 WP_416501348.1 hypothetical protein, partial [Klebsiella pneumoniae] diamond 168 58.5 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
32077469 32077469 PRJNA813520_S_NODE_1538_length_291_cov_7.408397_g1491_i0 PRJNA813520 1538 291 7.408397 21.55843527 Solemya velum gill symbiont 2340 Bacteria Bacteria 43.1 0.0448   NR WP_078456856.1 2340 g1491 i0 70.8 0.247422680412371 24 7 24.7 0 103 32 328 351 WP_078456856.1 reverse transcriptase domain-containing protein [Solemya velum gill symbiont] diamond 72 43.1 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Solemya velum gill symbiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;