RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA813520" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA813520 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26801098 26801098 PRJNA813520_S_NODE_5341_length_157_cov_1.625000_g5294_i0 PRJNA813520 5341 157 1.625 2.55125 Gammaretrovirus murleu 3428959 Viruses Viruses 110 1.25e-26   NR 8WUS_E 11801 g5294 i0 100 9.74522292993631 51 0 97.5 0 155 3 322 372 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 1530 110 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
27496825 27496825 PRJNA813520_S_NODE_303_length_585_cov_5.546763_g266_i0 PRJNA813520 303 585 5.546763 32.44856355 Gammaretrovirus murleu 3428959 Viruses Viruses 397 3.8699999999999997e-135   NR 8WUS_E 11801 g266 i0 99 5.96923076923077 194 2 99.5 0 583 2 130 323 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 3492 397 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
28759614 28759614 PRJNA813520_S_NODE_287_length_604_cov_8.243478_g251_i0 PRJNA813520 287 604 8.243478 49.79060712 Moloney murine leukemia virus 11801 Viruses Viruses 372 6.85e-116   NR NP_057933.2 11801 g251 i0 97.9 3.75496688741722 189 4 93.9 0 38 604 1108 1296 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 2268 372 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;