RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA812715" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA812715 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27370742 27370742 PRJNA812715_P_NODE_79623_length_285_cov_1.344340_g77823_i0 PRJNA812715 79623 285 1.34434 3.831369 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 63.2 4.01e-9   NR ETO24731.1 46433 g77823 i0 42.4 0.621052631578947 59 34 62.1 0 274 98 450 508 ETO24731.1 transcription factor E2F/dimerization partner family protein, partial [Reticulomyxa filosa] diamond 177 63.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27528220 27528220 PRJNA812715_P_NODE_31003_length_539_cov_2.418455_g29236_i0 PRJNA812715 31003 539 2.418455 13.03547245 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 89 1.14e-18   NR ETO36728.1 46433 g29236 i0 36.9 0.723562152133581 130 81 72.4 1 48 437 40 168 ETO36728.1 hypothetical protein RFI_00333 [Reticulomyxa filosa] diamond 390 89 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28380761 28380761 PRJNA812715_P_NODE_42786_length_426_cov_1.308782_g40991_i0 PRJNA812715 42786 426 1.308782 5.57541132 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 85.9 5.66e-18   NR ETO36728.1 46433 g40991 i0 37.6 0.880281690140845 125 77 88 1 375 1 43 166 ETO36728.1 hypothetical protein RFI_00333 [Reticulomyxa filosa] diamond 375 85.9 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;