RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA812001" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA812001 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28547654 28547654 PRJNA812001_P_NODE_4207_length_752_cov_3.238586_g3981_i0 PRJNA812001 4207 752 3.238586 24.35416672 Chthoniobacter 295577 Bacteria Bacteria 77 6.37e-12   NR MBM3880340.1 2026799 g3981 i0 33.3 2.51329787234043 177 117 70.6 1 751 221 803 978 MBM3880340.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 1890 77.4 0.994832041343669 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31571428 31571428 PRJNA812001_P_NODE_1336_length_1262_cov_7.383516_g1178_i0 PRJNA812001 1336 1262 7.383516 93.17997192 Opitutales bacterium 2026772 Bacteria Bacteria 62.4 1.01e-6   NR HLS28691.1 2026772 g1178 i0 31.5 0.301901743264659 127 80 29.5 3 631 1002 88 210 HLS28691.1 immunoglobulin domain-containing protein [Opitutales bacterium] diamond 381 62.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
32741129 32741129 PRJNA812001_P_NODE_130240_length_241_cov_1.803571_g129994_i0 PRJNA812001 130240 241 1.803571 4.34660611 Haloferula luteola 595692 Bacteria Bacteria 86.7 5.88e-18   NR WP_184015519.1 595692 g129994 i0 46.8 0.95850622406639 77 41 95.9 0 5 235 194 270 WP_184015519.1 hemolysin family protein [Haloferula luteola] diamond 231 86.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula luteola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;