RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA812001" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA812001 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21212490 21212490 PRJNA812001_P_NODE_14037_length_430_cov_1.478992_g13791_i0 PRJNA812001 14037 430 1.478992 6.3596656 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 105 6.9e-25   NR CEO98920.1 37360 g13791 i0 57.6 1.18604651162791 85 36 59.3 0 15 269 156 240 CEO98920.1 hypothetical protein PBRA_007034 [Plasmodiophora brassicae] diamond 510 105 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31508152 31508152 PRJNA812001_P_NODE_16796_length_402_cov_1.969605_g16550_i0 PRJNA812001 16796 402 1.969605 7.9178121 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 68.9 3.76e-11   NR CEO98592.1 37360 g16550 i0 51.7 0.43283582089552203 58 28 43.3 0 1 174 162 219 CEO98592.1 hypothetical protein PBRA_006706 [Plasmodiophora brassicae] diamond 174 68.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;