RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA812001" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA812001 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19937122 19937122 PRJNA812001_P_NODE_21656_length_369_cov_8.560811_g21410_i0 PRJNA812001 21656 369 8.560811 31.58939259 Deinococcus sp. KNUC121 47478 Bacteria Bacteria 207 1.21e-60   NR WP_239051326.1 2917691 g21410 i0 86.2 0.943089430894309 116 16 94.3 0 367 20 29 144 WP_239051326.1 NAD-dependent DNA ligase LigA [Deinococcus sp. KNUC1210] diamond 348 207 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. KNUC1210
28759555 28759555 PRJNA812001_P_NODE_67047_length_265_cov_9.177083_g66801_i0 PRJNA812001 67047 265 9.177083 24.31926995 Fervidobacterium sp. 1871331 Bacteria Bacteria 142 6.65e-41   NR MDM7320314.1 1871331 g66801 i0 87.5 0.815094339622642 72 9 81.5 0 48 263 1 72 MDM7320314.1 hypothetical protein [Fervidobacterium sp.] diamond 216 142 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
29620460 29620460 PRJNA812001_P_NODE_42270_length_305_cov_1.193966_g42024_i0 PRJNA812001 42270 305 1.193966 3.6415963 Bacteria 2 Bacteria Bacteria 165 6.63e-45   NR 1TAQ_A 271 g42024 i0 95.3 4.18032786885246 85 4 83.6 0 42 296 639 723 1TAQ_A Chain A, TAQ DNA POLYMERASE [Thermus aquaticus] diamond 1275 165 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
30844274 30844274 PRJNA812001_P_NODE_72054_length_259_cov_1.333333_g71808_i0 PRJNA812001 72054 259 1.333333 3.45333247 Meiothermus sp. 1955249 Bacteria Bacteria 164 6.879999999999999e-48   NR WP_314136593.1 1955249 g71808 i0 96.4 0.972972972972973 84 3 97.3 0 258 7 52 135 WP_314136593.1 hypothetical protein [Meiothermus sp.] diamond 252 164 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;