RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA812001" and tax_kingdom = "Thermoproteati"

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tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 4 ✖

bioproject 1

  • PRJNA812001 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28096563 28096563 PRJNA812001_P_NODE_76305_length_253_cov_1.822222_g76059_i0 PRJNA812001 76305 253 1.822222 4.61022166 Nitrosotalea devaniterrae 1078905 Archaea Archaea 154 1.3499999999999997e-42   NR CUR51026.1 1078905 g76059 i0 85.7 0.99604743083004 84 12 99.6 0 1 252 408 491 CUR51026.1 tRNA-guanine(15) transglycosylase [Nitrosotalea devaniterrae] diamond 252 154 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Nitrosotalea devaniterrae
29359620 29359620 PRJNA812001_P_NODE_5209_length_678_cov_13.080992_g4973_i0 PRJNA812001 5209 678 13.080992 88.68912576 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 103 1.7700000000000003e-21   NR MEM2002060.1 3058293 g4973 i0 48.6 0.464601769911504 105 54 46.5 0 317 3 918 1022 MEM2002060.1 RNase H-like domain-containing protein [Candidatus Methanomethylicaceae archaeon] diamond 315 103 1 Archaea   Thermoproteati Candidatus Methanomethylicota Candidatus Methanomethylicia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon
29801462 29801462 PRJNA812001_P_NODE_70931_length_260_cov_2.240642_g70685_i0 PRJNA812001 70931 260 2.240642 5.8256692 Thermoproteota archaeon 2056631 Archaea Archaea 86.3 8.08e-18   NR MDT7864687.1 2056631 g70685 i0 95.1 0.473076923076923 41 2 47.3 0 138 16 284 324 MDT7864687.1 ribonucleotide-diphosphate reductase subunit beta [Thermoproteota archaeon] diamond 123 86.3 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32488939 32488939 PRJNA812001_P_NODE_15459_length_414_cov_6.023460_g15213_i0 PRJNA812001 15459 414 6.02346 24.9371244 Thermoproteota archaeon 2056631 Archaea Archaea 176 4.1e-54   NR MDT7864681.1 2056631 g15213 i0 92.3 0.659420289855073 91 7 65.9 0 119 391 37 127 MDT7864681.1 hypothetical protein [Thermoproteota archaeon] diamond 273 176 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;