RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA812001" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA812001 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12289524 12289524 PRJNA812001_P_NODE_11410_length_468_cov_1.703797_g11164_i0 PRJNA812001 11410 468 1.703797 7.97376996 Halobacteriales 2235 Archaea Archaea 133 1.47e-34   NR MEF8936725.1 1954478 g11164 i0 50.4 1.70512820512821 133 63 83.3 1 30 419 197 329 MEF8936725.1 zinc ribbon domain-containing protein [Halovenus sp.] diamond 798 133 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halovenus Halovenus sp.
30022870 30022870 PRJNA812001_P_NODE_8791_length_526_cov_7.686534_g8546_i0 PRJNA812001 8791 526 7.686534 40.43116884 Halovenus sp. HT4 1954478 Archaea Archaea 295 4.55e-97   NR WP_336328368.1 3126691 g8546 i0 87.4 1.90494296577947 167 21 95.2 0 26 526 52 218 WP_336328368.1 glycine cleavage system aminomethyltransferase GcvT [Halovenus sp. HT40] diamond 1002 295 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halovenus Halovenus sp. HT40
32772371 32772371 PRJNA812001_P_NODE_64100_length_270_cov_0.888325_g63854_i0 PRJNA812001 64100 270 0.888325 2.3984775 Methanosarcina sp. 2213 Archaea Archaea 46.2 0.00116   NR HET8686735.1 2213 g63854 i0 52.1 0.533333333333333 48 18 53.3 2 235 92 72 114 HET8686735.1 hypothetical protein [Methanosarcina sp.] diamond 144 46.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;