contig_metadata
10 rows where analysis = "diamond", bioproject = "PRJNA811725" and tax_phylum = "Gemmatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18661405 | 18661405 | PRJNA811725_P_NODE_27975_length_292_cov_3.246575_g27729_i0 | PRJNA811725 | 27975 | 292 | 3.246575 | 9.479999 | Gemmatimonadaceae | 219687 | Bacteria | Bacteria | 136 | 3.7e-36 | NR | BAH39932.1 | 379066 | g27729 | i0 | 76.8 | 6.8013698630137 | 95 | 18 | 93.5 | 1 | 290 | 18 | 296 | 390 | BAH39932.1 potassium-transporting ATPase A chain [Gemmatimonas aurantiaca T-27] | diamond | 1986 | 137 | 0.992700729927007 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas aurantiaca | |
| 25036371 | 25036371 | PRJNA811725_P_NODE_26600_length_298_cov_4.884444_g26354_i0 | PRJNA811725 | 26600 | 298 | 4.884444 | 14.55564312 | Gemmatimonadetes bacterium T265 | 2839016 | Bacteria | Bacteria | 143 | 1.12e-39 | NR | GJG86219.1 | 2839016 | g26354 | i0 | 65.8 | 2.35570469798658 | 117 | 21 | 98.7 | 1 | 3 | 296 | 84 | 200 | GJG86219.1 chromosome partitioning protein ParB [Gemmatimonadetes bacterium T265] | diamond | 702 | 143 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadetes bacterium T265 | |||||
| 26864721 | 26864721 | PRJNA811725_P_NODE_39301_length_245_cov_1.715116_g39055_i0 | PRJNA811725 | 39301 | 245 | 1.715116 | 4.2020342 | Gemmatirosa sp. | 2510638 | Bacteria | Bacteria | 60.1 | 1.85e-8 | NR | HEY0778991.1 | 2510638 | g39055 | i0 | 64.7 | 0.624489795918367 | 51 | 17 | 61.2 | 1 | 164 | 15 | 1 | 51 | HEY0778991.1 hypothetical protein [Gemmatirosa sp.] | diamond | 153 | 60.1 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa sp. | |
| 27433741 | 27433741 | PRJNA811725_P_NODE_8383_length_509_cov_7.628440_g8140_i0 | PRJNA811725 | 8383 | 509 | 7.62844 | 38.8287596 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 105 | 1.24e-26 | NR | MEA3246250.1 | 2026742 | g8140 | i0 | 100 | 0.330058939096267 | 56 | 0 | 33 | 0 | 170 | 3 | 1 | 56 | MEA3246250.1 response regulator [Gemmatimonadota bacterium] | diamond | 168 | 105 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 27906852 | 27906852 | PRJNA811725_P_NODE_26205_length_299_cov_4.097345_g25959_i0 | PRJNA811725 | 26205 | 299 | 4.097345 | 12.25106155 | Gemmatimonadetes bacterium T265 | 2839016 | Bacteria | Bacteria | 90.5 | 9.47e-20 | NR | GJG88332.1 | 2839016 | g25959 | i0 | 86.3 | 1.04347826086957 | 51 | 7 | 51.2 | 0 | 140 | 292 | 2 | 52 | GJG88332.1 hypothetical protein tb265_35130 [Gemmatimonadetes bacterium T265] | diamond | 312 | 90.5 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadetes bacterium T265 | |||||
| 28601848 | 28601848 | PRJNA811725_P_NODE_32427_length_273_cov_1.410000_g32181_i0 | PRJNA811725 | 32427 | 273 | 1.41 | 3.8493 | Gemmatimonadetes bacterium T265 | 2839016 | Bacteria | Bacteria | 125 | 1.78e-31 | NR | GJG86602.1 | 2839016 | g32181 | i0 | 63.7 | 3.02197802197802 | 91 | 33 | 100 | 0 | 273 | 1 | 143 | 233 | GJG86602.1 flagellar hook protein FlgE [Gemmatimonadetes bacterium T265] | diamond | 825 | 125 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadetes bacterium T265 | |||||
| 30307532 | 30307532 | PRJNA811725_P_NODE_27372_length_295_cov_3.351351_g27126_i0 | PRJNA811725 | 27372 | 295 | 3.351351 | 9.88648545 | Gemmatimonadaceae bacterium | 2026741 | Bacteria | Bacteria | 64.3 | 1.56e-10 | NR | HKH92170.1 | 2026741 | g27126 | i0 | 56.4 | 0.559322033898305 | 55 | 24 | 55.9 | 0 | 1 | 165 | 40 | 94 | HKH92170.1 hypothetical protein [Gemmatimonadaceae bacterium] | diamond | 165 | 64.3 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 31326956 | 31326956 | PRJNA811725_P_NODE_26435_length_299_cov_2.628319_g26189_i0 | PRJNA811725 | 26435 | 299 | 2.628319 | 7.85867381 | Gemmatimonadaceae | 219687 | Bacteria | Bacteria | 87.4 | 9.81e-20 | NR | WP_345784837.1 | 2014610 | g26189 | i0 | 73.1 | 2.58862876254181 | 67 | 14 | 63.2 | 1 | 111 | 299 | 4 | 70 | WP_345784837.1 50S ribosomal protein L29 [Roseisolibacter agri] | diamond | 774 | 87.8 | 0.995444191343964 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Roseisolibacter | Roseisolibacter agri | |
| 31413115 | 31413115 | PRJNA811725_P_NODE_28696_length_289_cov_2.347222_g28450_i0 | PRJNA811725 | 28696 | 289 | 2.347222 | 6.78347158 | Longimicrobiales bacterium | 2910168 | Bacteria | Bacteria | 153 | 2.95e-41 | NR | HEX6558995.1 | 2910168 | g28450 | i0 | 77 | 7.26643598615917 | 100 | 18 | 98.6 | 1 | 287 | 3 | 440 | 539 | HEX6558995.1 excinuclease ABC subunit UvrC [Longimicrobiales bacterium] | diamond | 2100 | 153 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiales bacterium | |||
| 31666029 | 31666029 | PRJNA811725_P_NODE_30737_length_281_cov_1.586538_g30491_i0 | PRJNA811725 | 30737 | 281 | 1.586538 | 4.45817178 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 134 | 6.389999999999998e-35 | NR | HEX6432992.1 | 2448054 | g30491 | i0 | 76.6 | 0.822064056939502 | 77 | 18 | 82.2 | 0 | 276 | 46 | 400 | 476 | HEX6432992.1 hypothetical protein [Gemmatimonadales bacterium] | diamond | 231 | 134 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;