RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA811714" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA811714 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28159901 28159901 PRJNA811714_P_NODE_16385_length_261_cov_4.898936_g16192_i0 PRJNA811714 16385 261 4.898936 12.78622296 Planctomycetota bacterium 2026780 Bacteria Bacteria 44.3 0.0129   NR MCZ7647757.1 2026780 g16192 i0 40.4 0.655172413793103 57 32 65.5 2 62 232 47 101 MCZ7647757.1 ThuA domain-containing protein [Planctomycetota bacterium] diamond 171 44.3 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
28664960 28664960 PRJNA811714_P_NODE_27207_length_227_cov_3.000000_g27014_i0 PRJNA811714 27207 227 3 6.81 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 41.2 0.0332   NR MEI8108849.1 2026799 g27014 i0 46.8 0.621145374449339 47 20 62.1 1 70 210 15 56 MEI8108849.1 SH3 domain-containing protein [Verrucomicrobiota bacterium] diamond 141 41.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28917231 28917231 PRJNA811714_P_NODE_15108_length_268_cov_2.369231_g14915_i0 PRJNA811714 15108 268 2.369231 6.34953908 Omnitrophica bacterium GWA2_52_12 1801816 Bacteria Bacteria 42.7 0.049   NR OGW72581.1 1801816 g14915 i0 41.5 0.593283582089552 53 29 58.2 2 86 241 202 253 OGW72581.1 MAG: hypothetical protein A2Y02_01450 [Omnitrophica bacterium GWA2_52_12] diamond 159 42.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica bacterium GWA2_52_12
31065560 31065560 PRJNA811714_P_NODE_32135_length_201_cov_4.710938_g31942_i0 PRJNA811714 32135 201 4.710938 9.46898538 Lentisphaerota bacterium 1932692 Bacteria Bacteria 43.1 0.0162   NR MBT4823336.1 1932692 g31942 i0 45.2 0.626865671641791 42 21 62.7 1 58 183 252 291 MBT4823336.1 hypothetical protein [Lentisphaerota bacterium] diamond 126 43.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;