RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA811714" and tax_clade = "FCB group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • FCB group · 8 ✖

bioproject 1

  • PRJNA811714 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19936117 19936117 PRJNA811714_P_NODE_27616_length_226_cov_3.019608_g27423_i0 PRJNA811714 27616 226 3.019608 6.82431408 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 150 3.82e-40   NR MEE8596102.1 2026742 g27423 i0 98.6 0.982300884955752 74 1 98.2 0 3 224 897 970 MEE8596102.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 222 150 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27970209 27970209 PRJNA811714_P_NODE_10845_length_297_cov_4.125000_g10652_i0 PRJNA811714 10845 297 4.125 12.25125 Elizabethkingia meningoseptica 238 Bacteria Bacteria 153 4.32e-46   NR WP_342855241.1 238 g10652 i0 100 1.88888888888889 88 0 88.9 0 264 1 1 88 WP_342855241.1 YDG domain-containing protein, partial [Elizabethkingia meningoseptica] diamond 561 153 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia meningoseptica
29801446 29801446 PRJNA811714_P_NODE_17591_length_256_cov_3.032787_g17398_i0 PRJNA811714 17591 256 3.032787 7.76393472 Roseisolibacter agri 2014610 Bacteria Bacteria 47 0.00138   NR WP_284348802.1 2014610 g17398 i0 50 0.6328125 54 23 63.3 1 62 223 349 398 WP_284348802.1 APC family permease [Roseisolibacter agri] diamond 162 47 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
30085755 30085755 PRJNA811714_P_NODE_24072_length_235_cov_2.685185_g23879_i0 PRJNA811714 24072 235 2.685185 6.31018475 Bacteroidota bacterium 1898104 Bacteria Bacteria 46.2 0.0019   NR MFN7300647.1 1898104 g23879 i0 32.3 1.58297872340426 62 39 75.3 1 33 209 111 172 MFN7300647.1 NAD(P)-dependent oxidoreductase [Bacteroidota bacterium] diamond 372 46.2 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
30591334 30591334 PRJNA811714_P_NODE_27153_length_227_cov_3.000000_g26960_i0 PRJNA811714 27153 227 3 6.81 Bacteroides acidifaciens 85831 Bacteria Bacteria 42.7 0.0291   NR WP_300915839.1 85831 g26960 i0 35.8 0.700440528634361 53 32 70 1 187 29 119 169 WP_300915839.1 ComEC/Rec2 family competence protein [Bacteroides acidifaciens] diamond 159 42.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides acidifaciens
31159716 31159716 PRJNA811714_P_NODE_27395_length_226_cov_6.039216_g27202_i0 PRJNA811714 27395 226 6.039216 13.64862816 Longimicrobium sp. 2029185 Bacteria Bacteria 88.6 2.22e-18   NR HEV3049408.1 2029185 g27202 i0 66.2 0.86283185840708 65 22 86.3 0 14 208 743 807 HEV3049408.1 amino acid adenylation domain-containing protein [Longimicrobium sp.] diamond 195 88.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31476503 31476503 PRJNA811714_P_NODE_21616_length_242_cov_2.733728_g21423_i0 PRJNA811714 21616 242 2.733728 6.61562176 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 163 4.81e-45   NR MBX9733134.1 1869212 g21423 i0 98.8 0.991735537190083 80 1 99.2 0 241 2 178 257 MBX9733134.1 DUF1800 domain-containing protein [Chitinophagaceae bacterium] diamond 240 163 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
32235962 32235962 PRJNA811714_P_NODE_29618_length_214_cov_8.510638_g29425_i0 PRJNA811714 29618 214 8.510638 18.21276532 Sediminibacterium sp. 1917865 Bacteria Bacteria 155 3.42e-42   NR MBR2649213.1 1917865 g29425 i0 100 0.995327102803738 71 0 99.5 0 2 214 393 463 MBR2649213.1 hypothetical protein [Sediminibacterium sp.] diamond 213 155 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;