RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA811237" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA811237 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27338856 27338856 PRJNA811237_S_NODE_35263_length_161_cov_0.910714_g35023_i0 PRJNA811237 35263 161 0.910714 1.46624954 Deinococcales bacterium 2478479 Bacteria Bacteria 48.1 1.24e-4   NR MBC7646480.1 2478479 g35023 i0 57.1 0.782608695652174 42 18 78.3 0 147 22 179 220 MBC7646480.1 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein [Deinococcales bacterium] diamond 126 48.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales     Deinococcales bacterium
27433697 27433697 PRJNA811237_S_NODE_18963_length_193_cov_1.416667_g18723_i0 PRJNA811237 18963 193 1.416667 2.73416731 Synergistaceae bacterium 2053624 Bacteria Bacteria 76.6 1.7e-14   NR MDR1916406.1 2053624 g18723 i0 58.3 3.59067357512953 60 25 93.3 0 6 185 257 316 MDR1916406.1 molecular chaperone DnaJ [Synergistaceae bacterium] diamond 693 76.6 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
27600373 27600373 PRJNA811237_S_NODE_8184_length_263_cov_1.401869_g7944_i0 PRJNA811237 8184 263 1.401869 3.68691547 Deinococcus 1298 Bacteria Bacteria 70.9 1.55e-12   NR OOV14930.1 1938608 g7944 i0 53.4 5.01901140684411 73 30 83.3 2 258 40 157 225 OOV14930.1 hypothetical protein BXU09_09940 [Deinococcus sp. LM3] diamond 1320 71.2 0.995786516853933 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. LM3
30780932 30780932 PRJNA811237_S_NODE_7774_length_268_cov_1.744292_g7534_i0 PRJNA811237 7774 268 1.744292 4.67470256 Deinococcus deserti 310783 Bacteria Bacteria 58.9 1.03e-7   NR WP_012692038.1 310783 g7534 i0 36.7 1.09701492537313 98 40 94 4 8 259 447 536 WP_012692038.1 glutamine--tRNA ligase/YqeY domain fusion protein [Deinococcus deserti] diamond 294 58.9 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus deserti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;