RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA811237" and tax_clade = "SAR86 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR86 cluster · 2 ✖

bioproject 1

  • PRJNA811237 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29905270 29905270 PRJNA811237_S_NODE_2271_length_481_cov_1.740741_g2032_i0 PRJNA811237 2271 481 1.740741 8.37296421 Bacteria 2 Bacteria Bacteria 98.2 7.580000000000001e-21   NR EJP71849.1 1123866 g2032 i0 63.9 1.80873180873181 72 26 44.9 0 4 219 309 380 EJP71849.1 MAG: tryptophan 2,3- dioxygenase [SAR86 cluster bacterium SAR86A] diamond 870 99 0.991919191919192 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium SAR86A
32898226 32898226 PRJNA811237_S_NODE_12420_length_224_cov_2.331429_g12180_i0 PRJNA811237 12420 224 2.331429 5.22240096 SAR86 cluster bacterium 2030880 Bacteria Bacteria 100 4.439999999999999e-23   NR MCH2263753.1 2030880 g12180 i0 63 2.87946428571429 73 27 97.8 0 224 6 242 314 MCH2263753.1 indoleamine 2,3-dioxygenase [SAR86 cluster bacterium] diamond 645 100 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;