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contig_metadata

26 rows where analysis = "diamond", bioproject = "PRJNA807836" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 26 ✖

tax_kingdom 1

bioproject 1

  • PRJNA807836 · 26 ✖

analysis 1

  • diamond · 26 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
807214 807214 PRJNA807836_S_NODE_2821_length_1025_cov_98.707983_g2649_i0 PRJNA807836 2821 1025 98.707983 1011.75682575 Acinetobacter indicus 756892 Bacteria Bacteria 166 5.559999999999999e-46   NR WP_216075783.1 756892 g2649 i0 74.3 0.638048780487805 218 43 62.3 5 27 665 1 210 WP_216075783.1 hypothetical protein, partial [Acinetobacter indicus] diamond 654 166 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter indicus
8460396 8460396 PRJNA807836_S_NODE_5607_length_702_cov_2.275040_g5357_i0 PRJNA807836 5607 702 2.27504 15.9707808 Acinetobacter indicus 756892 Bacteria Bacteria 246 1.08e-79   NR WP_168405950.1 756892 g5357 i0 95.3 0.551282051282051 129 6 55.1 0 3 389 48 176 WP_168405950.1 HPP family protein, partial [Acinetobacter indicus] diamond 387 246 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter indicus
11011368 11011368 PRJNA807836_S_NODE_8969_length_514_cov_2.000000_g8695_i0 PRJNA807836 8969 514 2 10.28 Klebsiella pneumoniae 573 Bacteria Bacteria 320 2.03e-109   NR WP_317869802.1 573 g8695 i0 96.2 0.928015564202335 159 6 92.8 0 513 37 35 193 WP_317869802.1 peroxidase family protein, partial [Klebsiella pneumoniae] diamond 477 320 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
17385522 17385522 PRJNA807836_S_NODE_28814_length_247_cov_0.885057_g28538_i0 PRJNA807836 28814 247 0.885057 2.18609079 Sphingomonas turrisvirgatae 1888892 Bacteria Bacteria 167 2.1e-46   NR WP_069321885.1 1888892 g28538 i0 96.3 1.9919028340081 82 3 99.6 0 247 2 150 231 WP_069321885.1 PQQ-dependent dehydrogenase, methanol/ethanol family [Sphingomonas turrisvirgatae] diamond 492 167 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas turrisvirgatae
25033939 25033939 PRJNA807836_S_NODE_9160_length_507_cov_1.299539_g8885_i0 PRJNA807836 9160 507 1.299539 6.58866273 Bacteria 2 Bacteria Bacteria 112 4.88e-29   NR PLK57950.1 186490 g8885 i0 80 2.71005917159763 65 13 38.5 0 324 130 15 79 PLK57950.1 cold-shock protein [Candidatus Palibaumannia cicadellinicola] diamond 1374 113 0.991150442477876 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria     Candidatus Palibaumannia Candidatus Palibaumannia cicadellinicola
26642551 26642551 PRJNA807836_S_NODE_20801_length_298_cov_3.173333_g20525_i0 PRJNA807836 20801 298 3.173333 9.45653234 Salmonella enterica 28901 Bacteria Bacteria 169 3.57e-51   NR WP_312604412.1 28901 g20525 i0 88.3 0.946308724832215 94 11 94.6 0 15 296 1 94 WP_312604412.1 Kunitz-type protease inhibitor, partial [Salmonella enterica] diamond 282 169 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica
26832740 26832740 PRJNA807836_S_NODE_26561_length_255_cov_2.115385_g26285_i0 PRJNA807836 26561 255 2.115385 5.39423175 Salmonella enterica 28901 Bacteria Bacteria 75.1 2.33e-14   NR WP_312604412.1 28901 g26285 i0 51.3 2.89411764705882 78 28 82.4 3 241 32 128 203 WP_312604412.1 Kunitz-type protease inhibitor, partial [Salmonella enterica] diamond 738 75.1 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica
27528124 27528124 PRJNA807836_S_NODE_22223_length_287_cov_1.079439_g21947_i0 PRJNA807836 22223 287 1.079439 3.09798993 Magnetospirillum gryphiswaldense MSR-1 431944 Bacteria Bacteria 44.3 0.0172   NR CAM74930.1 431944 g21947 i0 40 0.470383275261324 45 25 47 1 19 153 337 379 CAM74930.1 malonyl CoA-acyl carrier protein transacylase [Magnetospirillum gryphiswaldense MSR-1] diamond 135 44.3 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum gryphiswaldense
27718033 27718033 PRJNA807836_S_NODE_3644_length_903_cov_15.985542_g3446_i0 PRJNA807836 3644 903 15.985542 144.34944426 Salmonella enterica 28901 Bacteria Bacteria 334 7.72e-113   NR WP_312604412.1 28901 g3446 i0 78.5 1.36212624584718 205 44 68.1 0 83 697 1 205 WP_312604412.1 Kunitz-type protease inhibitor, partial [Salmonella enterica] diamond 1230 334 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica
28010848 28010848 PRJNA807836_S_NODE_23745_length_275_cov_2.202970_g23469_i0 PRJNA807836 23745 275 2.20297 6.0581675 Bacteria 2 Bacteria Bacteria 43.5 0.0304   NR MCP5283212.1 50421 g23469 i0 37.7 1.47272727272727 69 42 74.2 1 220 17 756 824 MCP5283212.1 filamentous hemagglutinin N-terminal domain-containing protein [Rhodoferax sp.] diamond 405 43.5 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax sp.
28128188 28128188 PRJNA807836_S_NODE_16805_length_338_cov_1.958491_g16529_i0 PRJNA807836 16805 338 1.958491 6.61969958 Salmonella enterica 28901 Bacteria Bacteria 107 1.95e-26   NR WP_312604412.1 28901 g16529 i0 55.4 1.94378698224852 112 47 97.6 2 2 331 4 114 WP_312604412.1 Kunitz-type protease inhibitor, partial [Salmonella enterica] diamond 657 107 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica
28412321 28412321 PRJNA807836_S_NODE_4686_length_784_cov_6.949367_g4458_i0 PRJNA807836 4686 784 6.949367 54.48303728 Salmonella enterica 28901 Bacteria Bacteria 160 5.51e-45   NR WP_312604412.1 28901 g4458 i0 46.8 0.784438775510204 205 95 75 6 18 605 3 202 WP_312604412.1 Kunitz-type protease inhibitor, partial [Salmonella enterica] diamond 615 160 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica
29012465 29012465 PRJNA807836_S_NODE_26648_length_255_cov_1.219780_g26372_i0 PRJNA807836 26648 255 1.21978 3.110439 Rhodoplanes sp. 1968906 Bacteria Bacteria 43.9 0.016   NR HEX5844959.1 1968906 g26372 i0 40.2 0.964705882352941 82 38 96.5 3 255 10 118 188 HEX5844959.1 RNA pseudouridine synthase [Rhodoplanes sp.] diamond 246 43.9 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodoplanes Rhodoplanes sp.
29012467 29012467 PRJNA807836_S_NODE_29848_length_244_cov_0.900585_g29572_i0 PRJNA807836 29848 244 0.900585 2.1974274 Acinetobacter indicus 756892 Bacteria Bacteria 45.8 0.00154   NR WP_168415081.1 756892 g29572 i0 88.5 0.639344262295082 26 3 32 0 165 242 29 54 WP_168415081.1 hypothetical protein, partial [Acinetobacter indicus] diamond 156 45.8 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter indicus
30243924 30243924 PRJNA807836_S_NODE_5332_length_722_cov_44.821263_g5087_i0 PRJNA807836 5332 722 44.821263 323.60951886 Salmonella enterica 28901 Bacteria Bacteria 62.8 2.13e-8   NR MDR5387524.1 90371 g5087 i0 81.1 0.614958448753463 148 24 61.5 1 10 453 2 145 MDR5387524.1 hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium] diamond 444 62.8 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica
30402221 30402221 PRJNA807836_S_NODE_26353_length_257_cov_1.255435_g26077_i0 PRJNA807836 26353 257 1.255435 3.22646795 Alphaproteobacteria bacterium 1913988 Bacteria Bacteria 45.1 0.00675   NR MBO7244758.1 1913988 g26077 i0 48.6 0.408560311284047 35 18 40.9 0 66 170 496 530 MBO7244758.1 hypothetical protein [Alphaproteobacteria bacterium] diamond 105 45.1 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       Alphaproteobacteria bacterium
30875678 30875678 PRJNA807836_S_NODE_25374_length_263_cov_3.342105_g25098_i0 PRJNA807836 25374 263 3.342105 8.78973615 Salmonella enterica 28901 Bacteria Bacteria 129 1.86e-35   NR WP_312604412.1 28901 g25098 i0 78.4 0.844106463878327 74 16 84.4 0 3 224 132 205 WP_312604412.1 Kunitz-type protease inhibitor, partial [Salmonella enterica] diamond 222 129 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica
30875679 30875679 PRJNA807836_S_NODE_26234_length_258_cov_0.816216_g25958_i0 PRJNA807836 26234 258 0.816216 2.10583728 Salmonella enterica 28901 Bacteria Bacteria 76.6 6.19e-15   NR WP_312604412.1 28901 g25958 i0 80.5 0.476744186046512 41 8 47.7 0 257 135 165 205 WP_312604412.1 Kunitz-type protease inhibitor, partial [Salmonella enterica] diamond 123 76.6 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica
30907506 30907506 PRJNA807836_S_NODE_7974_length_557_cov_455.652893_g7707_i0 PRJNA807836 7974 557 455.652893 2537.98661401 Acinetobacter indicus 756892 Bacteria Bacteria 242 7.42e-79   NR WP_171526443.1 756892 g7707 i0 73.9 0.824057450628366 153 40 82.4 0 461 3 1 153 WP_171526443.1 TauD/TfdA family dioxygenase, partial [Acinetobacter indicus] diamond 459 242 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter indicus
31602943 31602943 PRJNA807836_S_NODE_4316_length_822_cov_183.385848_g4100_i0 PRJNA807836 4316 822 183.385848 1507.43167056 Salmonella enterica 28901 Bacteria Bacteria 338 6.149999999999999e-115   NR WP_312604412.1 28901 g4100 i0 78.5 0.748175182481752 205 44 74.8 0 31 645 1 205 WP_312604412.1 Kunitz-type protease inhibitor, partial [Salmonella enterica] diamond 615 338 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica
31611732 31611732 PRJNA807836_S_NODE_31016_length_241_cov_0.916667_g30740_i0 PRJNA807836 31016 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 43.9 0.0012   NR WP_369124374.1 715 g30740 i0 51.3 1.0207468879668 39 19 48.5 0 161 45 14 52 WP_369124374.1 GAG-pre-integrase domain-containing protein [Actinobacillus pleuropneumoniae] diamond 246 43.9 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae
31737973 31737973 PRJNA807836_S_NODE_14317_length_374_cov_2.036545_g14041_i0 PRJNA807836 14317 374 2.036545 7.6166783 Enterobacteriaceae 543 Bacteria Bacteria 72 1.43e-12   NR WP_317869804.1 573 g14041 i0 72.5 0.834224598930481 51 12 40.9 1 206 358 12 60 WP_317869804.1 Kunitz family serine protease inhibitor, partial [Klebsiella pneumoniae] diamond 312 72 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
31855781 31855781 PRJNA807836_S_NODE_2297_length_1132_cov_10.595845_g1813_i1 PRJNA807836 2297 1132 10.595845 119.9449654 Acinetobacter indicus 756892 Bacteria Bacteria 343 1.27e-115   NR WP_171526443.1 756892 g1813 i1 97.7 0.458480565371025 173 4 45.8 0 1025 507 1 173 WP_171526443.1 TauD/TfdA family dioxygenase, partial [Acinetobacter indicus] diamond 519 343 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter indicus
32592409 32592409 PRJNA807836_S_NODE_11519_length_432_cov_3.512535_g11243_i0 PRJNA807836 11519 432 3.512535 15.1741512 Enterobacteriaceae 543 Bacteria Bacteria 233 1.3e-75   NR WP_317869804.1 573 g11243 i0 83.7 1.96527777777778 141 22 97.9 1 423 1 1 140 WP_317869804.1 Kunitz family serine protease inhibitor, partial [Klebsiella pneumoniae] diamond 849 234 0.995726495726496 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
32646106 32646106 PRJNA807836_S_NODE_1940_length_1218_cov_12.318777_g1813_i0 PRJNA807836 1940 1218 12.318777 150.04270386 Acinetobacter indicus 756892 Bacteria Bacteria 346 3.049999999999999e-116   NR WP_171526443.1 756892 g1813 i0 98.3 0.426108374384236 173 3 42.6 0 108 626 1 173 WP_171526443.1 TauD/TfdA family dioxygenase, partial [Acinetobacter indicus] diamond 519 346 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter indicus
32866835 32866835 PRJNA807836_S_NODE_6340_length_651_cov_6.782007_g6083_i0 PRJNA807836 6340 651 6.782007 44.15086557 Acinetobacter indicus 756892 Bacteria Bacteria 350 5.829999999999999e-121   NR WP_171526443.1 756892 g6083 i0 98.8 0.797235023041475 173 2 79.7 0 543 25 1 173 WP_171526443.1 TauD/TfdA family dioxygenase, partial [Acinetobacter indicus] diamond 519 350 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter indicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;