RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA807836" and tax_phylum = "Porifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA807836 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28633477 28633477 PRJNA807836_S_NODE_31187_length_241_cov_0.916667_g30911_i0 PRJNA807836 31187 241 0.916667 2.20916747 Halichondria panicea 6063 Porifera other_Eukaryota 63.2 2.35e-9   NR XP_064384047.1 6063 g30911 i0 51.8 2.09128630705394 56 27 69.7 0 68 235 690 745 XP_064384047.1 uncharacterized protein LOC135333044 [Halichondria panicea] diamond 504 63.2 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
28759489 28759489 PRJNA807836_S_NODE_24087_length_273_cov_1.155000_g23811_i0 PRJNA807836 24087 273 1.155 3.15315 Halichondria panicea 6063 Porifera other_Eukaryota 60.8 2.25e-8   NR XP_064392399.1 6063 g23811 i0 36.7 3.72527472527473 90 55 98.9 1 4 273 217 304 XP_064392399.1 uncharacterized protein LOC135340042 [Halichondria panicea] diamond 1017 60.8 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
30907485 30907485 PRJNA807836_S_NODE_19734_length_308_cov_3.144681_g19458_i0 PRJNA807836 19734 308 3.144681 9.68561748 Corticium candelabrum 121492 Porifera other_Eukaryota 43.9 0.0291   NR XP_062515793.1 121492 g19458 i0 36.4 0.642857142857143 66 42 64.3 0 97 294 88 153 XP_062515793.1 uncharacterized protein LOC134191216 [Corticium candelabrum] diamond 198 43.9 1 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Plakinidae Corticium Corticium candelabrum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;