RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA807836" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA807836 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28507009 28507009 PRJNA807836_S_NODE_11967_length_420_cov_2.481268_g11691_i0 PRJNA807836 11967 420 2.481268 10.4213256 Polypterus senegalus 55291 Chordata Chordata 62 4.29e-8   NR KAG2469303.1 55291 g11691 i0 70.7 0.878571428571429 41 12 29.3 0 164 286 11 51 KAG2469303.1 SRPK2 kinase, partial [Polypterus senegalus] diamond 369 62 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29864637 29864637 PRJNA807836_S_NODE_28651_length_247_cov_0.885057_g28375_i0 PRJNA807836 28651 247 0.885057 2.18609079 Cricetulus griseus 10029 Chordata Chordata 44.7 0.00808   NR ERE88163.1 10029 g28375 i0 35.6 0.716599190283401 59 21 68 2 200 33 823 867 ERE88163.1 CDKN2A-interacting protein [Cricetulus griseus] diamond 177 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
32615010 32615010 PRJNA807836_S_NODE_12740_length_403_cov_1.793939_g12464_i0 PRJNA807836 12740 403 1.793939 7.22957417 Rhinatrema bivittatum 194408 Chordata Chordata 44.7 0.0389   NR XP_029445817.1 194408 g12464 i0 42.9 0.312655086848635 42 24 31.3 0 270 395 7 48 XP_029445817.1 uncharacterized protein LOC115084722 isoform X4 [Rhinatrema bivittatum] diamond 126 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;