RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA807836" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA807836 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28222605 28222605 PRJNA807836_S_NODE_15686_length_353_cov_1.560714_g15410_i0 PRJNA807836 15686 353 1.560714 5.50932042 Puccinia striiformis 27350 Fungi Fungi 66.2 7.18e-10   NR POW19195.1 27350 g15410 i0 47.9 1.19830028328612 71 36 59.5 1 211 2 112 182 POW19195.1 hypothetical protein PSHT_04931 [Puccinia striiformis] diamond 423 66.2 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Pucciniaceae Puccinia Puccinia striiformis
28443972 28443972 PRJNA807836_S_NODE_26946_length_253_cov_1.333333_g26670_i0 PRJNA807836 26946 253 1.333333 3.37333249 Piloderma croceum F 1598 765440 Fungi Fungi 44.3 0.0122   NR KIM73463.1 765440 g26670 i0 33.8 0.806324110671937 68 44 80.6 1 25 228 376 442 KIM73463.1 hypothetical protein PILCRDRAFT_15204 [Piloderma croceum F 1598] diamond 204 44.3 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Atheliales Atheliaceae Piloderma Piloderma croceum
30157605 30157605 PRJNA807836_S_NODE_21492_length_293_cov_1.050000_g21216_i0 PRJNA807836 21492 293 1.05 3.0765 Russulales 452342 Fungi Fungi 48.9 4.21e-4   NR KAI0060165.1 48021 g21216 i0 46.7 9.48122866894198 75 30 66.6 2 40 234 126 200 KAI0060165.1 NAD-malate dehydrogenase [Artomyces pyxidatus] diamond 2778 48.9 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Russulales Auriscalpiaceae Artomyces Artomyces pyxidatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;