RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA807836" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA807836 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29296312 29296312 PRJNA807836_S_NODE_29989_length_244_cov_0.900585_g29713_i0 PRJNA807836 29989 244 0.900585 2.1974274 unclassified Veillonella 2630086 Bacteria Bacteria 160 6.819999999999998e-47   NR WP_009352911.1 2630086 g29713 i0 100 0.995901639344262 81 0 99.6 0 243 1 154 234 WP_009352911.1 MULTISPECIES: ABC transporter permease [unclassified Veillonella] diamond 243 160 1 Bacteria   Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella  
30402220 30402220 PRJNA807836_S_NODE_24693_length_268_cov_2.364103_g24417_i0 PRJNA807836 24693 268 2.364103 6.33579604 Bacillota bacterium 1879010 Bacteria Bacteria 43.9 0.0161   NR MCL5780781.1 1879010 g24417 i0 36.1 1.36567164179104 61 38 67.2 1 235 56 30 90 MCL5780781.1 archaetidylserine decarboxylase [Bacillota bacterium] diamond 366 43.9 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
31643130 31643130 PRJNA807836_S_NODE_30016_length_244_cov_0.900585_g29740_i0 PRJNA807836 30016 244 0.900585 2.1974274 Massilimicrobiota 1924110 Bacteria Bacteria 44.7 0.00741   NR WP_162607616.1 1776392 g29740 i0 42.5 1.79508196721311 73 34 83.6 3 212 9 74 143 WP_162607616.1 MFS transporter [Massilimicrobiota timonensis] diamond 438 45.1 0.991130820399113 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Massilimicrobiota Massilimicrobiota timonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;