RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA807836" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA807836 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27938734 27938734 PRJNA807836_S_NODE_28445_length_248_cov_0.880000_g28169_i0 PRJNA807836 28445 248 0.88 2.1824 Pseudoglutamicibacter cumminsii 156979 Bacteria Bacteria 124 6.509999999999999e-31   NR WP_146191945.1 156979 g28169 i0 76.8 0.991935483870968 82 19 99.2 0 248 3 192 273 WP_146191945.1 hypothetical protein, partial [Pseudoglutamicibacter cumminsii] diamond 246 124 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudoglutamicibacter Pseudoglutamicibacter cumminsii
30717605 30717605 PRJNA807836_S_NODE_25274_length_264_cov_1.869110_g24998_i0 PRJNA807836 25274 264 1.86911 4.9344504 Polymorphospora rubra 338584 Bacteria Bacteria 43.9 0.0182   NR WP_212820799.1 338584 g24998 i0 41.7 0.545454545454545 48 28 54.5 0 80 223 273 320 WP_212820799.1 phosphoribosyltransferase family protein [Polymorphospora rubra] diamond 144 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Polymorphospora Polymorphospora rubra
31855786 31855786 PRJNA807836_S_NODE_26737_length_254_cov_1.690608_g26461_i0 PRJNA807836 26737 254 1.6906080000000001 4.29414432 Janibacter melonis 262209 Bacteria Bacteria 42.7 0.0295   NR WP_123092332.1 262209 g26461 i0 40 0.590551181102362 50 30 59.1 0 171 22 74 123 WP_123092332.1 helix-turn-helix domain-containing protein [Janibacter melonis] diamond 150 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter melonis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;