RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA807836" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA807836 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28633465 28633465 PRJNA807836_S_NODE_24647_length_269_cov_1.178571_g24371_i0 PRJNA807836 24647 269 1.178571 3.17035599 Muribaculaceae bacterium 2498093 Bacteria Bacteria 43.5 0.0271   NR MBR6283079.1 2498093 g24371 i0 39.5 0.479553903345725 43 26 48 0 50 178 154 196 MBR6283079.1 protein kinase [Muribaculaceae bacterium] diamond 129 43.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae   Muribaculaceae bacterium
29959410 29959410 PRJNA807836_S_NODE_30251_length_243_cov_0.905882_g29975_i0 PRJNA807836 30251 243 0.905882 2.20129326 Emticicia soli 2027878 Bacteria Bacteria 43.1 0.028   NR WP_340234256.1 2027878 g29975 i0 32.4 0.839506172839506 68 44 82.7 2 225 25 401 467 WP_340234256.1 ComEC/Rec2 family competence protein [Emticicia soli] diamond 204 43.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Emticicia Emticicia soli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;