RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA807685" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA807685 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28222589 28222589 PRJNA807685_P_NODE_52546_length_168_cov_2.045802_g51473_i0 PRJNA807685 52546 168 2.045802 3.43694736 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42 0.0268   NR XP_004343970.1 1257118 g51473 i0 50 0.892857142857143 50 19 82.1 3 150 13 1615 1662 XP_004343970.1 uncharacterized protein ACA1_052580 [Acanthamoeba castellanii str. Neff] diamond 150 42 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29485466 29485466 PRJNA807685_P_NODE_32490_length_222_cov_1.048649_g31417_i0 PRJNA807685 32490 222 1.048649 2.32800078 Amoeba proteus 5775 Tubulinea other_Eukaryota 55.1 1.04e-6   NR AKN09689.1 5775 g31417 i0 42.3 0.959459459459459 71 19 95.9 1 3 215 193 241 AKN09689.1 Tom20 [Amoeba proteus] diamond 213 55.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;