RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA807347" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA807347 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26737216 26737216 PRJNA807347_P_NODE_17541_length_234_cov_2.565217_g17438_i0 PRJNA807347 17541 234 2.565217 6.00260778 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 47 6.34e-4   NR AAX25032.2 6182 g17438 i0 76 0.320512820512821 25 6 32.1 0 116 42 86 110 AAX25032.2 SJCHGC04714 protein, partial [Schistosoma japonicum] diamond 75 47 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
27591476 27591476 PRJNA807347_P_NODE_4204_length_404_cov_1.489426_g4101_i0 PRJNA807347 4204 404 1.489426 6.01728104 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 87 2.4e-18   NR AAX25032.2 6182 g4101 i0 54.1 0.727722772277228 98 36 72.8 2 296 3 33 121 AAX25032.2 SJCHGC04714 protein, partial [Schistosoma japonicum] diamond 294 87 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
30559475 30559475 PRJNA807347_P_NODE_8773_length_281_cov_1.052885_g8670_i0 PRJNA807347 8773 281 1.052885 2.95860685 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 50.1 8.51e-6   NR ABA40899.1 6182 g8670 i0 59 0.416370106761566 39 14 39.5 1 235 125 4 42 ABA40899.1 SJCHGC09658 protein, partial [Schistosoma japonicum] diamond 117 50.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;