RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA807347" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA807347 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
806266 806266 PRJNA807347_P_NODE_12141_length_252_cov_0.865922_g12038_i0 PRJNA807347 12141 252 0.865922 2.18212344 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 163 1.0099999999999999e-46   NR WP_367886304.1 3062599 g12038 i0 95.2 0.988095238095238 83 4 98.8 0 250 2 173 255 WP_367886304.1 aminotransferase class V-fold PLP-dependent enzyme [Pseudogemmatithrix spongiicola] diamond 249 163 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
16108726 16108726 PRJNA807347_P_NODE_15293_length_245_cov_0.906977_g15190_i0 PRJNA807347 15293 245 0.906977 2.22209365 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 122 2.4399999999999998e-32   NR HRN52352.1 2026741 g15190 i0 73.4 0.96734693877551 79 21 96.7 0 8 244 17 95 HRN52352.1 matrixin family metalloprotease [Gemmatimonadaceae bacterium] diamond 237 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27085855 27085855 PRJNA807347_P_NODE_17622_length_232_cov_2.433962_g17519_i0 PRJNA807347 17622 232 2.433962 5.64679184 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 72.4 1.86e-14   NR WP_367885580.1 3062599 g17519 i0 85 0.517241379310345 40 6 51.7 0 96 215 1 40 WP_367885580.1 molybdopterin dinucleotide binding domain-containing protein [Pseudogemmatithrix spongiicola] diamond 120 72.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
28222575 28222575 PRJNA807347_P_NODE_13106_length_250_cov_0.870056_g13003_i0 PRJNA807347 13106 250 0.870056 2.17514 Gemmatimonas sp. 1962908 Bacteria Bacteria 106 9.74e-25   NR MBA3854235.1 1962908 g13003 i0 82.4 0.816 68 12 81.6 0 247 44 39 106 MBA3854235.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Gemmatimonas sp.] diamond 204 106 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
30875648 30875648 PRJNA807347_P_NODE_14074_length_248_cov_0.880000_g13971_i0 PRJNA807347 14074 248 0.88 2.1824 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 145 3.4099999999999998e-40   NR WP_367886895.1 3062599 g13971 i0 90.1 2.96370967741935 81 8 98 0 244 2 170 250 WP_367886895.1 hypothetical protein [Pseudogemmatithrix spongiicola] diamond 735 145 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;