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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA807347" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA807347 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1222497 1222497 PRJNA807347_P_NODE_14721_length_246_cov_1.040462_g14618_i0 PRJNA807347 14721 246 1.040462 2.55953652 Nyctereutes procyonoides 34880 Chordata Chordata 63.2 1.34e-9   NR XP_055162229.1 34880 g14618 i0 69 1.5609756097561 42 13 51.2 0 127 2 207 248 XP_055162229.1 translation initiation factor IF-2-like isoform X1 [Nyctereutes procyonoides] diamond 384 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
27022538 27022538 PRJNA807347_P_NODE_7942_length_291_cov_1.137615_g7839_i0 PRJNA807347 7942 291 1.137615 3.31045965 Polypterus senegalus 55291 Chordata Chordata 44.7 0.0132   NR KAG2459877.1 55291 g7839 i0 65.7 1.10309278350515 35 12 36.1 0 111 7 204 238 KAG2459877.1 TCB1 transposase, partial [Polypterus senegalus] diamond 321 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
27906749 27906749 PRJNA807347_P_NODE_14565_length_247_cov_0.879310_g14462_i0 PRJNA807347 14565 247 0.87931 2.1718957 Myxine glutinosa 7769 Chordata Chordata 58.9 5.09e-8   NR XP_067986719.1 7769 g14462 i0 80.6 2.5748987854251 36 6 43.7 1 110 3 2 36 XP_067986719.1 uncharacterized protein [Myxine glutinosa] diamond 636 58.9 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
28159818 28159818 PRJNA807347_P_NODE_10925_length_259_cov_1.645161_g10822_i0 PRJNA807347 10925 259 1.645161 4.26096699 Hypanus sabinus 79690 Chordata Chordata 52 1.33e-5   NR XP_059846139.1 79690 g10822 i0 84.6 3.50965250965251 26 4 30.1 0 257 180 170 195 XP_059846139.1 uncharacterized protein LOC132405391 isoform X1 [Hypanus sabinus] diamond 909 52 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
28231353 28231353 PRJNA807347_P_NODE_12706_length_250_cov_1.762712_g12603_i0 PRJNA807347 12706 250 1.762712 4.40678 Felidae 9681 Chordata Chordata 62.8 3.47e-9   NR XP_047697379.1 61388 g12603 i0 60.3 1.032 58 16 61.2 2 154 2 300 357 XP_047697379.1 interleukin enhancer-binding factor 2 isoform X2 [Prionailurus viverrinus] diamond 258 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Prionailurus Prionailurus viverrinus
28633404 28633404 PRJNA807347_P_NODE_16087_length_244_cov_0.900585_g15984_i0 PRJNA807347 16087 244 0.900585 2.1974274 Malurus melanocephalus 175006 Chordata Chordata 68.2 4.06e-11   NR XP_057242091.1 175006 g15984 i0 83.8 2.23770491803279 37 6 45.5 0 3 113 79 115 XP_057242091.1 dipeptidyl peptidase 9 isoform X5 [Malurus melanocephalus] diamond 546 68.6 0.994169096209913 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Maluridae Malurus Malurus melanocephalus
29517163 29517163 PRJNA807347_P_NODE_7410_length_300_cov_1.110132_g7307_i0 PRJNA807347 7410 300 1.110132 3.330396 Limosa lapponica baueri 1758121 Chordata Chordata 55.1 3.37e-6   NR PKU37802.1 1758121 g7307 i0 86.2 0.29 29 3 28 1 85 2 1 29 PKU37802.1 syntaxin-binding protein hypothetical protein [Limosa lapponica baueri] diamond 87 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Scolopacidae Limosa Limosa lapponica
29683686 29683686 PRJNA807347_P_NODE_15270_length_245_cov_0.906977_g15167_i0 PRJNA807347 15270 245 0.906977 2.22209365 Chordata 7711 Chordata Chordata 43.5 0.0194   NR KAG2462375.1 55291 g15167 i0 70.8 4.99591836734694 24 7 29.4 0 20 91 185 208 KAG2462375.1 TC1A transposase, partial [Polypterus senegalus] diamond 1224 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29810192 29810192 PRJNA807347_P_NODE_13131_length_250_cov_0.864407_g13028_i0 PRJNA807347 13131 250 0.864407 2.1610175 Artiodactyla 91561 Chordata Chordata 67.8 4.81e-11   NR XP_070317002.1 9874 g13028 i0 74.4 19.428 43 11 51.6 0 225 97 95 137 XP_070317002.1 SPRY domain-containing SOCS box protein 3 isoform X3 [Odocoileus virginianus] diamond 4857 68.2 0.994134897360704 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Odocoileus Odocoileus virginianus
30307431 30307431 PRJNA807347_P_NODE_16652_length_243_cov_0.905882_g16549_i0 PRJNA807347 16652 243 0.905882 2.20129326 Ambystoma mexicanum 8296 Chordata Chordata 70.5 6.36e-12   NR XP_069490531.1 8296 g16549 i0 55.7 1.53086419753086 61 25 75.3 1 192 10 346 404 XP_069490531.1 bifunctional coenzyme A synthase isoform X1 [Ambystoma mexicanum] diamond 372 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
31326928 31326928 PRJNA807347_P_NODE_17995_length_208_cov_4.081481_g17892_i0 PRJNA807347 17995 208 4.081481 8.48948048 Chondrichthyes 7777 Chordata Chordata 58.2 8.73e-8   NR XP_055512691.1 7782 g17892 i0 100 18.5769230769231 28 0 40.4 0 207 124 554 581 XP_055512691.1 soluble guanylate cyclase 88E-like [Leucoraja erinaceus] diamond 3864 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
31358735 31358735 PRJNA807347_P_NODE_12336_length_251_cov_1.000000_g12233_i0 PRJNA807347 12336 251 1 2.51 Amphibia 8292 Chordata Chordata 58.2 1.45e-7   NR XP_069483860.1 8296 g12233 i0 49.1 2.53386454183267 53 27 63.3 0 1 159 27 79 XP_069483860.1 uncharacterized protein [Ambystoma mexicanum] diamond 636 58.5 0.994871794871795 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
31508051 31508051 PRJNA807347_P_NODE_13576_length_249_cov_0.875000_g13473_i0 PRJNA807347 13576 249 0.875 2.17875 Ranitomeya imitator 111125 Chordata Chordata 42.7 0.0386   NR CAJ0933740.1 111125 g13473 i0 52.5 0.481927710843373 40 19 48.2 0 193 74 99 138 CAJ0933740.1 unnamed protein product [Ranitomeya imitator] diamond 120 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
32108943 32108943 PRJNA807347_P_NODE_13098_length_250_cov_0.870056_g12995_i0 PRJNA807347 13098 250 0.870056 2.17514 Bufotes viridis 30338 Chordata Chordata 46.6 0.00173   NR CAK8634393.1 30338 g12995 i0 50 0.996 40 20 48 0 120 239 518 557 CAK8634393.1 LINE-1 retrotransposable element ORF2 protein [Bufotes viridis] diamond 249 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;