RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA806354" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA806354 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16108548 16108548 PRJNA806354_P_NODE_40593_length_242_cov_0.911243_g40484_i0 PRJNA806354 40593 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 130 5.06e-33   NR WP_007279800.1 256847 g40484 i0 75.6 417.520661157025 78 19 96.7 0 7 240 631 708 WP_007279800.1 ATP-dependent chaperone ClpB [Lentisphaera araneosa] diamond 101040 130 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae Lentisphaera Lentisphaera araneosa
27243785 27243785 PRJNA806354_P_NODE_28923_length_275_cov_2.920792_g28814_i0 PRJNA806354 28923 275 2.920792 8.032178 Planctomycetota bacterium 2026780 Bacteria Bacteria 44.7 0.0104   NR MEM7518636.1 2026780 g28814 i0 58.3 0.392727272727273 36 15 39.3 0 27 134 4 39 MEM7518636.1 DUF1601 domain-containing protein [Planctomycetota bacterium] diamond 108 44.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29201674 29201674 PRJNA806354_P_NODE_41349_length_241_cov_0.916667_g41240_i0 PRJNA806354 41349 241 0.916667 2.20916747 Omnitrophica bacterium RIFCSPHIGHO2_ 2035772 Bacteria Bacteria 74.7 3.64e-15   NR OGW83799.1 1801823 g41240 i0 57.7 0.647302904564315 52 22 64.7 0 2 157 61 112 OGW83799.1 MAG: hypothetical protein A3C47_04815 [Omnitrophica bacterium RIFCSPHIGHO2_02_FULL_51_18] diamond 156 74.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica bacterium RIFCSPHIGHO2_02_FULL_51_18
32362328 32362328 PRJNA806354_P_NODE_38259_length_246_cov_0.890173_g38150_i0 PRJNA806354 38259 246 0.890173 2.18982558 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 154 5.02e-44   NR MDE2028918.1 2035772 g38150 i0 92.5 1.95121951219512 80 6 97.6 0 4 243 183 262 MDE2028918.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [Candidatus Omnitrophota bacterium] diamond 480 154 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;