RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA804229" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA804229 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28042242 28042242 PRJNA804229_S_NODE_89525_length_215_cov_1.651163_g88567_i0 PRJNA804229 89525 215 1.651163 3.55000045 Candidatus Similichlamydia 1348235 Bacteria Bacteria 91.3 4.19e-21   NR KPK32738.1 1704235 g88567 i0 56.3 5.87441860465116 71 31 99.1 0 213 1 13 83 KPK32738.1 MAG: antitermination protein NusG [Chlamydiae bacterium SM23_39] diamond 1263 91.7 0.995637949836423 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium SM23_39
28412271 28412271 PRJNA804229_S_NODE_189586_length_150_cov_0.897196_g188628_i0 PRJNA804229 189586 150 0.897196 1.345794 Chlamydia psittaci 83554 Bacteria Bacteria 41.6 0.00421   NR EPJ15322.1 1112256 g188628 i0 63.6 1.96 33 12 66 0 106 8 8 40 EPJ15322.1 retrovirus-related Pol polyLINE-1 domain protein, partial [Chlamydia psittaci 02DC18] diamond 294 41.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
32014010 32014010 PRJNA804229_S_NODE_110938_length_193_cov_3.520000_g109980_i0 PRJNA804229 110938 193 3.52 6.7936 Candidatus Similichlamydia laticola 2170265 Bacteria Bacteria 108 3.22e-26   NR WP_114544175.1 2170265 g109980 i0 81.3 0.994818652849741 64 12 99.5 0 2 193 191 254 WP_114544175.1 elongation factor Tu [Candidatus Similichlamydia laticola] diamond 192 108 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Parilichlamydiaceae Candidatus Similichlamydia Candidatus Similichlamydia laticola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;