RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA801875" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA801875 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27054217 27054217 PRJNA801875_P_NODE_4562_length_153_cov_1.338983_g4459_i0 PRJNA801875 4562 153 1.338983 2.04864399 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 64.7 1.99e-10   NR XP_002681945.1 5762 g4459 i0 57.1 1.92156862745098 49 21 96.1 0 150 4 242 290 XP_002681945.1 rRNA (uridine-2'-O-)-methyltransferase [Naegleria gruberi] diamond 294 64.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
32330761 32330761 PRJNA801875_P_NODE_899_length_441_cov_5.674877_g797_i0 PRJNA801875 899 441 5.674877 25.02620757 Acrasis kona 1008807 Heterolobosea other_Eukaryota 180 3.2199999999999992e-55   NR KAL0482313.1 1008807 g797 i0 62.4 1.92517006802721 141 52 95.9 1 9 431 5 144 KAL0482313.1 peroxiredoxin [Acrasis kona] diamond 849 180 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;