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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA801875" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA801875 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3351962 3351962 PRJNA801875_P_NODE_1363_length_338_cov_2.759076_g1260_i0 PRJNA801875 1363 338 2.759076 9.32567688 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 133 7.22e-37   NR CAJ0958198.1 111125 g1260 i0 61.9 60.9230769230769 118 38 98.5 1 337 5 34 151 CAJ0958198.1 unnamed protein product [Ranitomeya imitator] diamond 20592 134 0.992537313432836 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
12280542 12280542 PRJNA801875_P_NODE_1750_length_283_cov_2.245968_g1647_i0 PRJNA801875 1750 283 2.245968 6.35608944 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 155 8.480000000000001e-44   NR XP_069481112.1 8296 g1647 i0 84.9 92.5123674911661 93 13 97.5 1 278 3 16 108 XP_069481112.1 large ribosomal subunit protein uL4 [Ambystoma mexicanum] diamond 26181 155 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
19073452 19073452 PRJNA801875_P_NODE_2295_length_231_cov_1.979592_g2192_i0 PRJNA801875 2295 231 1.979592 4.57285752 Aves 8782 Chordata Chordata 98.2 7.39e-23   NR XP_009995761.1 8897 g2192 i0 61.8 17.7662337662338 76 28 98.7 1 1 228 145 219 XP_009995761.1 PREDICTED: dnaJ homolog subfamily A member 2 [Chaetura pelagica] diamond 4104 98.6 0.995943204868154 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Apodidae Chaetura Chaetura pelagica
26610785 26610785 PRJNA801875_P_NODE_2541_length_214_cov_1.955307_g2438_i0 PRJNA801875 2541 214 1.955307 4.18435698 Gekko japonicus 146911 Chordata Chordata 83.6 1.06e-16   NR XP_015284848.1 146911 g2438 i0 66.1 1.68224299065421 59 20 82.7 0 2 178 51 109 XP_015284848.1 PREDICTED: thioredoxin reductase 3 isoform X1 [Gekko japonicus] diamond 360 83.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Gekko Gekko japonicus
26927574 26927574 PRJNA801875_P_NODE_2042_length_252_cov_2.875576_g1939_i0 PRJNA801875 2042 252 2.875576 7.24645152 Scyliorhinus canicula 7830 Chordata Chordata 44.7 0.00563   NR XP_038674818.1 7830 g1939 i0 36.7 0.94047619047619 79 48 92.9 2 1 234 15 92 XP_038674818.1 selenoprotein J [Scyliorhinus canicula] diamond 237 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
27726882 27726882 PRJNA801875_P_NODE_2544_length_214_cov_1.776536_g2441_i0 PRJNA801875 2544 214 1.776536 3.80178704 Opisthokonta 33154 Chordata Chordata 101 3.49e-24   NR CAH1273146.1 7740 g2441 i0 71.9 1.79439252336449 64 18 89.7 0 8 199 204 267 CAH1273146.1 RPS2 [Branchiostoma lanceolatum] diamond 384 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
28285679 28285679 PRJNA801875_P_NODE_1666_length_293_cov_1.271318_g1563_i0 PRJNA801875 1666 293 1.271318 3.72496174 Oikopleura dioica 34765 Chordata Chordata 44.7 0.0144   NR CBY09951.1 34765 g1563 i0 42.2 1.47440273037543 45 26 46.1 0 136 2 323 367 CBY09951.1 unnamed protein product [Oikopleura dioica] diamond 432 45.1 0.991130820399113 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
28570003 28570003 PRJNA801875_P_NODE_2107_length_246_cov_1.507109_g2004_i0 PRJNA801875 2107 246 1.507109 3.70748814 Marmota monax 9995 Chordata Chordata 70.1 8.58e-12   NR VTJ75047.1 9995 g2004 i0 53.2 1.51219512195122 62 29 75.6 0 60 245 51 112 VTJ75047.1 Hypothetical predicted protein, partial [Marmota monax] diamond 372 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota monax
29588956 29588956 PRJNA801875_P_NODE_2610_length_210_cov_2.188571_g2507_i0 PRJNA801875 2610 210 2.188571 4.5959991 root 1 Root_unresolved Root_unresolved 42 0.0455   NR KAB0373609.1 9886 g2507 i0 43.6 1.8 39 22 55.7 0 70 186 273 311 KAB0373609.1 hypothetical protein FD755_015268 [Muntiacus reevesi] diamond 378 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi
30180444 30180444 PRJNA801875_P_NODE_1112_length_384_cov_2.183381_g1009_i0 PRJNA801875 1112 384 2.183381 8.38418304 Mycteria americana 33587 Chordata Chordata 65.9 1.26e-10   NR KAK4816150.1 33587 g1009 i0 38.2 0.796875 102 54 78.9 4 42 344 27 120 KAK4816150.1 hypothetical protein QYF61_011532 [Mycteria americana] diamond 306 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
30433664 30433664 PRJNA801875_P_NODE_2333_length_229_cov_1.072165_g2230_i0 PRJNA801875 2333 229 1.072165 2.45525785 Bufotes viridis 30338 Chordata Chordata 60.5 1.77e-8   NR CAK8660862.1 30338 g2230 i0 48.6 2.80349344978166 72 34 94.3 2 13 228 242 310 CAK8660862.1 Ribosome biogenesis protein BMS1 homolog [Bufotes viridis] diamond 642 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
30505427 30505427 PRJNA801875_P_NODE_1893_length_269_cov_1.888889_g1790_i0 PRJNA801875 1893 269 1.888889 5.08111141 Branchiostoma 7737 Chordata Chordata 136 5.48e-38   NR XP_035673387.1 7739 g1790 i0 68.2 5.8996282527881 88 28 98.1 0 3 266 41 128 XP_035673387.1 ras-related protein Rab-24-like isoform X1 [Branchiostoma floridae] diamond 1587 137 0.992700729927007 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31832861 31832861 PRJNA801875_P_NODE_1937_length_263_cov_3.662281_g1834_i0 PRJNA801875 1937 263 3.662281 9.63179903 Metazoa 33208 Chordata Chordata 118 2.24e-29   NR KAJ7415991.1 371930 g1834 i0 64.6 5.63498098859316 82 29 93.5 0 249 4 169 250 KAJ7415991.1 DnaJ subfamily A member 2 [Pitangus sulphuratus] diamond 1482 118 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Tyrannidae Pitangus Pitangus sulphuratus
32561046 32561046 PRJNA801875_P_NODE_3579_length_173_cov_2.210145_g3476_i0 PRJNA801875 3579 173 2.210145 3.82355085 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.1 1.11e-8   NR XP_069061992.1 8319 g3476 i0 50.9 24.606936416185 55 26 95.4 1 3 167 4930 4983 XP_069061992.1 probable E3 ubiquitin-protein ligase HERC1 [Pleurodeles waltl] diamond 4257 60.5 0.993388429752066 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;