RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA801875" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA801875 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21203474 21203474 PRJNA801875_P_NODE_537_length_598_cov_5.893428_g437_i0 PRJNA801875 537 598 5.893428 35.24269944 Babesia microti strain RI 1133968 SAR_Eukaryotes SAR_Eukaryotes 345 1.7500000000000003e-117   NR XP_012648878.1 1133968 g437 i0 87.9 3.06020066889632 198 24 99.3 0 595 2 78 275 XP_012648878.1 ubiquitin C [Babesia microti strain RI] diamond 1830 345 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti
32497683 32497683 PRJNA801875_P_NODE_4519_length_154_cov_1.008403_g4416_i0 PRJNA801875 4519 154 1.008403 1.55294062 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 47.4 2.62e-4   NR AAZ20818.1 5811 g4416 i0 50 3.33116883116883 44 22 85.7 0 22 153 319 362 AAZ20818.1 ATP-binding cassette, sub-family G, member 4 [Toxoplasma gondii] diamond 513 47.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;