contig_metadata
5 rows where analysis = "diamond", bioproject = "PRJNA800090" and tax_phylum = "Campylobacterota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28926165 | 28926165 | PRJNA800090_P_NODE_71108_length_404_cov_0.979104_g68923_i0 | PRJNA800090 | 71108 | 404 | 0.979104 | 3.95558016 | Bacteria | 2 | Bacteria | Bacteria | 64.3 | 5.03e-9 | NR | MDR1615092.1 | 2268179 | g68923 | i0 | 46.6 | 2.16831683168317 | 73 | 39 | 54.2 | 0 | 391 | 173 | 16 | 88 | MDR1615092.1 hypothetical protein [Campylobacteraceae bacterium] | diamond | 876 | 64.3 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacteraceae bacterium | |||
| 29769680 | 29769680 | PRJNA800090_P_NODE_145311_length_261_cov_1.000000_g143126_i0 | PRJNA800090 | 145311 | 261 | 1 | 2.61 | Campylobacteraceae bacterium | 2268179 | Bacteria | Bacteria | 51.2 | 4.62e-5 | NR | MDR1615017.1 | 2268179 | g143126 | i0 | 39.3 | 1.02298850574713 | 89 | 47 | 94.3 | 5 | 261 | 16 | 81 | 169 | MDR1615017.1 hypothetical protein [Campylobacteraceae bacterium] | diamond | 267 | 51.2 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacteraceae bacterium | |||
| 30307363 | 30307363 | PRJNA800090_P_NODE_176332_length_234_cov_1.515152_g174147_i0 | PRJNA800090 | 176332 | 234 | 1.515152 | 3.54545568 | Campylobacter troglodytis | 654363 | Bacteria | Bacteria | 40.4 | 0.0491 | NR | TQR61090.1 | 654363 | g174147 | i0 | 38.9 | 0.692307692307692 | 54 | 29 | 67.9 | 2 | 211 | 53 | 36 | 86 | TQR61090.1 hypothetical protein DMC01_02855 [Campylobacter troglodytis] | diamond | 162 | 40.4 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter troglodytis | ||
| 30307368 | 30307368 | PRJNA800090_P_NODE_184592_length_231_cov_0.901235_g182407_i0 | PRJNA800090 | 184592 | 231 | 0.901235 | 2.08185285 | Helicobacteraceae bacterium | 2212472 | Bacteria | Bacteria | 76.6 | 2.44e-14 | NR | MDR0746336.1 | 2212472 | g182407 | i0 | 43.2 | 0.961038961038961 | 74 | 42 | 96.1 | 0 | 10 | 231 | 54 | 127 | MDR0746336.1 hypothetical protein [Helicobacteraceae bacterium] | diamond | 222 | 76.6 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacteraceae bacterium | |||
| 32339509 | 32339509 | PRJNA800090_P_NODE_150359_length_256_cov_1.037433_g148174_i0 | PRJNA800090 | 150359 | 256 | 1.037433 | 2.65582848 | root | 1 | Root_unresolved | Root_unresolved | 42 | 0.012 | NR | GAA6904105.1 | 210 | g148174 | i0 | 65.5 | 1.03125 | 29 | 10 | 34 | 0 | 205 | 119 | 45 | 73 | GAA6904105.1 hypothetical protein Kyoto207A_2120 [Helicobacter pylori] | diamond | 264 | 42.4 | 0.990566037735849 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter pylori |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;