RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA800090" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA800090 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10148610 10148610 PRJNA800090_P_NODE_122708_length_288_cov_1.333333_g120523_i0 PRJNA800090 122708 288 1.333333 3.83999904 Haemosporida 5819 SAR_Eukaryotes SAR_Eukaryotes 126 2.39e-33   NR ETW57274.1 57270 g120523 i0 66 11.9166666666667 94 30 95.8 1 1 276 155 248 ETW57274.1 hypothetical protein PFUGPA_00763 [Plasmodium falciparum Palo Alto/Uganda] diamond 3432 127 0.992125984251969 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
22474611 22474611 PRJNA800090_P_NODE_152238_length_254_cov_1.459459_g150053_i0 PRJNA800090 152238 254 1.459459 3.70702586 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 127 7.32e-33   NR XP_029219060.1 94643 g150053 i0 81.1 11.244094488189 74 14 87.4 0 31 252 8 81 XP_029219060.1 ribosomal protein RPL3 [Besnoitia besnoiti] diamond 2856 127 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
23749373 23749373 PRJNA800090_P_NODE_116759_length_297_cov_1.171053_g114574_i0 PRJNA800090 116759 297 1.171053 3.47802741 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 167 6.859999999999999e-48   NR XP_011128572.1 110365 g114574 i0 78.6 30.6363636363636 98 21 99 0 3 296 38 135 XP_011128572.1 putative serine/threonine-protein kinase/mitogen-activated protein kinase [Gregarina niphandrodes] diamond 9099 168 0.994047619047619 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
28199828 28199828 PRJNA800090_P_NODE_151166_length_255_cov_1.456989_g148981_i0 PRJNA800090 151166 255 1.456989 3.71532195 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 94.4 2.01e-20   NR XP_028861612.1 5858 g148981 i0 54.9 6.74117647058824 82 37 96.5 0 250 5 1 82 XP_028861612.1 AP-4 complex subunit mu, putative [Plasmodium malariae] diamond 1719 94.7 0.996832101372756 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium malariae
29052668 29052668 PRJNA800090_P_NODE_42628_length_561_cov_2.534553_g40461_i0 PRJNA800090 42628 561 2.534553 14.21884233 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 226 4.42e-72   NR XP_013233901.1 5802 g40461 i0 65.9 7.5668449197861 179 60 95.7 1 538 2 1 178 XP_013233901.1 40S ribosomal protein S9, putative [Eimeria tenella] diamond 4245 228 0.991228070175439 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
29210572 29210572 PRJNA800090_P_NODE_169069_length_238_cov_2.159763_g166884_i0 PRJNA800090 169069 238 2.159763 5.14023594 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 63.5 3.66e-10   NR XP_009690801.1 869250 g166884 i0 44.9 1.85294117647059 78 40 98.3 2 236 3 23 97 XP_009690801.1 60S ribosomal protein L18 [Theileria orientalis strain Shintoku] diamond 441 63.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis
30031506 30031506 PRJNA800090_P_NODE_98531_length_329_cov_1.123077_g96346_i0 PRJNA800090 98531 329 1.123077 3.69492333 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 124 1.7899999999999995e-31   NR KAF8820025.1 476202 g96346 i0 56.1 3.87537993920973 107 43 96.7 3 325 8 197 300 KAF8820025.1 putative glyoxalase I [Cardiosporidium cionae] diamond 1275 124 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Cardiosporidium Cardiosporidium cionae
31318001 31318001 PRJNA800090_P_NODE_174095_length_235_cov_0.879518_g171910_i0 PRJNA800090 174095 235 0.879518 2.0668673 Babesia bigemina 5866 SAR_Eukaryotes SAR_Eukaryotes 76.6 1.18e-14   NR XP_012769770.1 5866 g171910 i0 52.9 0.868085106382979 68 32 86.8 0 5 208 6 73 XP_012769770.1 hypothetical protein, conserved [Babesia bigemina] diamond 204 76.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina
32898067 32898067 PRJNA800090_P_NODE_104980_length_316_cov_2.554656_g102795_i0 PRJNA800090 104980 316 2.554656 8.07271296 Plasmodium chabaudi chabaudi 31271 SAR_Eukaryotes SAR_Eukaryotes 100 1.66e-24   NR SCM25146.1 31271 g102795 i0 53.4 0.977848101265823 103 45 94.9 2 302 3 1 103 SCM25146.1 Ribosomal Proteins L2, RNA binding domain/Ribosomal Proteins L2, C-terminal domain containing protein, putative [Plasmodium chabaudi chabaudi] diamond 309 100 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;