RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA800053" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA800053 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27537009 27537009 PRJNA800053_P_NODE_9443_length_314_cov_3.269710_g9279_i0 PRJNA800053 9443 314 3.26971 10.2668894 PVC group 1783257 Bacteria Bacteria 182 6.949999999999999e-56   NR WP_235655314.1 2094 g9279 i0 87.5 1.98726114649682 104 13 99.4 0 3 314 106 209 WP_235655314.1 hypothetical protein [Mycoplasmopsis arginini] diamond 624 182 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
27717885 27717885 PRJNA800053_P_NODE_11964_length_287_cov_3.299065_g11800_i0 PRJNA800053 11964 287 3.299065 9.46831655 Mycoplasmopsis arginini 2094 Bacteria Bacteria 164 6.41e-49   NR WP_235655314.1 2094 g11800 i0 88.4 0.993031358885017 95 11 99.3 0 3 287 16 110 WP_235655314.1 hypothetical protein [Mycoplasmopsis arginini] diamond 285 164 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
28254167 28254167 PRJNA800053_P_NODE_11986_length_287_cov_2.214953_g11822_i0 PRJNA800053 11986 287 2.214953 6.35691511 Mycoplasmopsis arginini 2094 Bacteria Bacteria 142 7.96e-38   NR WP_206602618.1 2094 g11822 i0 96.3 4.13937282229965 80 3 83.6 0 48 287 308 387 WP_206602618.1 NADH-quinone oxidoreductase subunit A [Mycoplasmopsis arginini] diamond 1188 143 0.993006993006993 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;